Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77170 553 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 315 / 2e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 308 / 2e-98 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 301 / 2e-95 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 300 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 295 / 3e-94 MEF21 mitochondrial editing factor 21 (.1) AT3G12770 297 / 2e-93 MEF22 mitochondrial editing factor 22 (.1) AT1G08070 297 / 6e-93 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 291 / 1e-91 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 287 / 1e-89 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103600 [exp] 322 / 2e-103 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 320 / 4e-103 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 316 / 2e-101 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 313 / 4e-100 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 313 / 4e-100 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G223900 [exp] 309 / 2e-99 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 296 / 1e-94 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G152000 [exp] 301 / 4e-94 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.001G019500 [exp] 297 / 1e-93 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020657 [exp] 611 / 0 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029884 [exp] 609 / 0 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 312 / 3e-100 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 309 / 2e-98 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029344 [exp] 300 / 3e-95 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 302 / 2e-94 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 300 / 1e-93 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 295 / 5e-93 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010320 [exp] 292 / 3e-92 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024876 [exp] 292 / 4e-90 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G164100.1 pacid=42768823 polypeptide=Potri.006G164100.1.p locus=Potri.006G164100 ID=Potri.006G164100.1.v4.1 annot-version=v4.1 ATGTGCATGAACTTCTTTCACCGTCGCCTACTCGGCCTTAGTAAACCCCATGCATTCAAACATCTCCATTACAGTCTTGCTCCAAAACCCACGCATTTTG ACTCTCAGTTTCCAACAAAGCAACCACCATCTTCACATCATTCAAACCAAGACCCATCTAAAACTATAGCAACCCAATTATCTAACTGCACCAGTTTACA AGAATTGAACCAAACTTATGCCCATGTTATCCGCACCCACGTTCTAGACGTGTACACTGCCCCATTTCATTGGAACAACTTAATAAGATGTTATACTAGA CTTGGTGCTCCTAACAAAGCGCTACAAATCTATGTATCCATGTCCCATGCTGGCATCTCCCCTGATAATTATACGCTTCCTATTGTCTTGAAAGCCGCAT GCCAGTGTTTTTCTATGGAGCTTGGTAGGCAGCTTCATTCCATTGCGATAAGGCTTGGCCTTGAGTTGAACGAATATTGTGAGAGTGGTTTCATTAGTCT GTACTCAAAATCTGGAGATTTTGGGGATGCATATAAAGTGTTTGAGGAAAATCTTGAGAGAAAGTTGGGTTCTTGGAATGCTATTATTGGAGGTCTTTGT CAAGGTGGGCGTGCAAAGGAAGTAATCGAGATGTTTATCGAGATGAGAAGTTGCGGGTTCAAGCCCGATGATGTGACCATGGTTAGTGTGACTTCAGCTT GTGGGATATTAGGGGATTTGCACTTGGCCCTTCAATTGCACAAGTATGTTTTTCAGGCCAAAAGTTTTGTAAAACCTGATATGTTGATGTTGAATTCACT CATTGACATGTATGGGAAGTGTGGTAGAATGGACTTGGCTTATATGGTATTTTCAAGGATGGACCAAAGAAACGTATCATCTTGGACTTCGATGATAGTC GGTTATGCGATGCATGGGCGAGCCAATGAAGCTATTGAATGTTTTAGTTGCATGAGAGATGCCGGTGTGAGGCCTAACCATGTGACTTTTATTGGGGTAC TAAGTGCATGTGGGCATGGTGGTCAGGTGCAAGAGGGAAGACATTATTTTGATATGATGAGAAATGATTATGGAATAATGCCCCGATTGCAGCATTATGG TTGCCTGGTGGATCTGCTTGGCCGAGCAGGGTTGCTGAAAGAAGGTAGGGAGATTGTTGAGGGGATGCCAATGAAGGCAAATGTGGTAATATGGGGGTGT TTGTTGAGCGCCTGTGAGAAATATTCAAATGTGCAGATGGGAGAGTGGGTGGCAAAGCATTTACTAGACTTGGAACCTTGGAATGATGGGGTGTATGTGG TTTTATCCAATATATATGCTAGCAGAGGCTTGTGGCTAGAGGTTGAGAGAGTTAGATTGATCATGAAGCAGCGAACGCTAGCTAAAATCCCTGCTTATAG TTTGGCAACAACTTCGAATTGA
AA sequence Show only first row Show all	>Potri.006G164100.1 pacid=42768823 polypeptide=Potri.006G164100.1.p locus=Potri.006G164100 ID=Potri.006G164100.1.v4.1 annot-version=v4.1 MCMNFFHRRLLGLSKPHAFKHLHYSLAPKPTHFDSQFPTKQPPSSHHSNQDPSKTIATQLSNCTSLQELNQTYAHVIRTHVLDVYTAPFHWNNLIRCYTR LGAPNKALQIYVSMSHAGISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLGLELNEYCESGFISLYSKSGDFGDAYKVFEENLERKLGSWNAIIGGLC QGGRAKEVIEMFIEMRSCGFKPDDVTMVSVTSACGILGDLHLALQLHKYVFQAKSFVKPDMLMLNSLIDMYGKCGRMDLAYMVFSRMDQRNVSSWTSMIV GYAMHGRANEAIECFSCMRDAGVRPNHVTFIGVLSACGHGGQVQEGRHYFDMMRNDYGIMPRLQHYGCLVDLLGRAGLLKEGREIVEGMPMKANVVIWGC LLSACEKYSNVQMGEWVAKHLLDLEPWNDGVYVVLSNIYASRGLWLEVERVRLIMKQRTLAKIPAYSLATTSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77170			Tetratricopeptide repeat (TPR)...		Potri.006G164100 [exp]	0	1
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	1.00	0.9358
AT2G04860			Tetratricopeptide repeat (TPR)...		Potri.014G029500 [exp]	2.23	0.9070
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	2.82	0.9336
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	2.82	0.9080
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	6.00	0.8974
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	7.48	0.9040
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	7.54	0.9206
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	9.16	0.8961
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	10.09	0.9048
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	11.00	0.8962

Compare expression of checked genes

Potri.006G164100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.