Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19930 861 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19910 824 / 0 RNA-dependent RNA polymerase family protein (.1) AT2G19920 751 / 0 RNA-dependent RNA polymerase family protein (.1) AT4G11130 119 / 6e-27 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 117 / 1e-26 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 106 / 5e-23 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G081300 [exp] 1765 / 0 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.018G028100 [exp] 120 / 3e-27 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.008G136100 [exp] 117 / 1e-26 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 115 / 6e-26 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.006G253500 [exp] 115 / 8e-26 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.008G135800 [exp] 100 / 5e-21 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 88 / 2e-17 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 83 / 7e-16 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012965 [exp] 699 / 0 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10019164 [exp] 121 / 1e-27 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 117 / 2e-26 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002910 [exp] 104 / 2e-22 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 102 / 4e-22 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002017 [exp] 100 / 3e-21 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.006G164400.1 pacid=42768824 polypeptide=Potri.006G164400.1.p locus=Potri.006G164400 ID=Potri.006G164400.1.v4.1 annot-version=v4.1 ATGGCAGAGATAAATAATGATAAAATAGTGCCATTGCCTTGTGCAGTGGAGGAACTGATAACCAAAATCTGTAGGGAGAAGGATCGAAGGCCGCTAGAAA CCAATACGAGGTCGACACTGGCTTCGTTAGGGGAAGAAGTTGCTTTAAATATTCTCAGGAGAATTTCTGGTCTAGAGATTAGAAAAAGTTTTGACGGTTT CGTTCTGCACTTGGCCAAACAGTGCTCTCCTAATATCAATGCTTCTTCTTCTTCCCCCCACATGCACTCCTCCCTCTCCCCATCTCCTCAACAACCCCAG AATCGTACAAACACCCGTTTACTGATGAATTCTCAAAGTGATTCTGGTGCTCAATCTCCAACTCCATTGAAGCTTGAAGGTTCATCAACCATGGATTCAC AGAGACAGAGAGGAAGTGAGTCTACAACCAGTCAACATTTGGTGGCTTTGGGAGAGCTTGAGTTTAGAAAAGCCTTTCTTATCTTAAATTACCTTGGAGG AAAGAATTTGGAAGAGGTGGTATCCGCTGATCAAATTAGGGGGTATAAGGATTTGCCAATGGAAACATTTGAGTCAAAAATTTGGGACGCTTTTGGATGT AGGAGAGATTATATAAAGGAAGAAGATCGTGTCAAGTATCTTGATTGGGATTCTGGGAAAGCACACATCTATCATTGTCATGTTGATCCGGATGGAAGTT ATAGGTTCAAGGGACCTTACCTCTCCAAGCAGAGAAATGTCCTGCAAAGGACCTTGGGAGATGACAATATCTTAATGGTAAAGTTTGAGGAGGTGAAAGA TGAGAGATATTCAGTGAGCAGTTCTCTGGATAATTATTTTGCCAAGTACAACAAGGTTCTTAGAGAAGGGATTCATGTTGGTTTGCGTTGTTACCGCTTT TTTGTGTTTAAAGATGGAGGCAAAGAAGAAAAAAAGAAAGACCCGACCACTTCTCCTGTCAAGTGTTTTTTCGTCTGCATGGAGTCTGTTGCATCGGTTG ATAATCAAGATAATATTTTGTGCGGGAAAACAATCCGTCAAGCTAGATCTGTTTTTATGCATGTGGACAATTTGTCCAGTTTGTCCAACTACATGGCTAG GTTTTCGCTGATTTTGTCAAAGACCATGAATCTGGAAGTTGATTTATCCTTTGTAGATATCAAGCCAATAGCTGATGAACCATGCCGGGATAAAGATGGT AATGCTGTTTACGGTACAGATGGGAAACCTCTTATACATACAGATGGAACTGGGTTTATATCGCATGATTTGGCTTTGAAATGCCCAAAGAATCAAGTCA AAGGAACTTGCCTCCAAGCTTCCAATATTGAGAGATTACGTGTTCATAATGAAGTCATGGAGCAAAATCCAGAATGTCTCCATGGGGATCCACCTTTGCT GATCCAGTTTCGTCTCTTCAATAATGGTACAGCTGTCAAGGGAACTTTCCTTGTGAATAAGAAGCTTAATCATCGAACTCTGCACGTAAGGCCTTCTATG ATTAAGGTTGAGACGGATCCAAAACTATCAAATACTTTTTCAAAAAATTCATTGGAGATAGTTGGAACCAGCTGTCGACCAAAGAAAACGTTCCTTTCAA AGAATTTAATTGCACTTCTTAGCTATGGTGGTGTTCCAGAAGAGTTTTTTATGGGAATATTGAATAATGCTCTGGAAGATGCCCATGGCATTCTCTCAAA CAAAAAAGCAGCTCTACGAGTTGCACTTAATTATGGGGATATGGACGATAACATTGTTGCAACAATGATTGGCTGTGGGATTCCGCTAGAAGAACCGTAT TTGCAACATCATTTGTCAATACTGAAGAAGGAAGAAAAGAAGAGTCTGAAAGGAGGAAAAATACCTGTGCCTGAATCATATTATTTGATGGGTACAGCTG ATCCAACTGGACTCTTGGAGAGTGATGAAGTTTGCATAATACTAGATTGTGGACAGGTTTCAGGGGAGGTATTAGTCTATCGGAATCCAGGTTTACATTT TGGAGATATACATATTTTAAAGGCTACATATGTAAGGGAGTTGGAAGATTTTGTTGGAAATGCCAAGTATGCTATATTTTTCCCATGCAAAGGACCACGG TCTTTGGCAGATGAGATGTCAGGTGGTGATTTTGATGGCGACATGTTTTTTGTGTCAAGAAATCCTCGGCTTCTGGAAAACTTTAAACAAACGGAACCTT GGACACCTTCTACTTCAACCCCTAATGAGCCTAACAGAAAACCAAGTGAATTCTCTGATGAGGAGTTGGAGGTTGAGCTTTTCAAACTATTTTTGAGGAA CAGGTTTCAGCCAAGTTTCACTGTGGGGGTGGCAGCGGATAGCTGGCTGGCAATGATGGATCGGCTTCTCACATTGGGAAATGATTGCACAGAAGAGATA GCTTGTGTGAAAAAAAATATCAATCTGTTGATTGATATATACTATGATGCTCTAGATGCTCCAAAGAAAGGTGGAAGAAAGATTGAAGTTCCAGAAGCTT TGAAGGCAGAGCTGTTCCCTCATTTTATGGAAAAACACGAAAAGAAAACTTATCGATCAACTTCCATATTGGGAAAAATTTATGATAAAGTGAAAGCATA CGAAGATATGGATCTGTCATCAAATGATGTTTGGAAACACCCTTGCTTTGACGGTGAAGTTCACGAGTCGTGCCTTGTGAAGTGGAAGGGACTCTACGGT CAATACAGGACGGAGATGCGCAATGCTCTCCAGGCTGGTAAAGAGAAGAACAACGAGGCTAATGAAGTCATAAAAAAATACAAGGAGATCTTATATGAAG CTGCGGAATTTAATTTGAGCAGACGAAGAGACGAGGAAATCTTTGAGGAGGCCAGGGCTCTATATCAGGTTACTTACAATCATGCCAAGAGGCAAGGAGC TGTTGGAAAATGCGGTTTTGCGTGGAGAGTCGCTGGTTTAGCTCTTTGCACGCTCTACGTTTTGAAGAATCAAGAAGAAAGACCTCTGATATGTTCACCA TCTGCTCTCAAAGGGATTTTGTAG
AA sequence Show only first row Show all	>Potri.006G164400.1 pacid=42768824 polypeptide=Potri.006G164400.1.p locus=Potri.006G164400 ID=Potri.006G164400.1.v4.1 annot-version=v4.1 MAEINNDKIVPLPCAVEELITKICREKDRRPLETNTRSTLASLGEEVALNILRRISGLEIRKSFDGFVLHLAKQCSPNINASSSSPHMHSSLSPSPQQPQ NRTNTRLLMNSQSDSGAQSPTPLKLEGSSTMDSQRQRGSESTTSQHLVALGELEFRKAFLILNYLGGKNLEEVVSADQIRGYKDLPMETFESKIWDAFGC RRDYIKEEDRVKYLDWDSGKAHIYHCHVDPDGSYRFKGPYLSKQRNVLQRTLGDDNILMVKFEEVKDERYSVSSSLDNYFAKYNKVLREGIHVGLRCYRF FVFKDGGKEEKKKDPTTSPVKCFFVCMESVASVDNQDNILCGKTIRQARSVFMHVDNLSSLSNYMARFSLILSKTMNLEVDLSFVDIKPIADEPCRDKDG NAVYGTDGKPLIHTDGTGFISHDLALKCPKNQVKGTCLQASNIERLRVHNEVMEQNPECLHGDPPLLIQFRLFNNGTAVKGTFLVNKKLNHRTLHVRPSM IKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDDNIVATMIGCGIPLEEPY LQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQVSGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPR SLADEMSGGDFDGDMFFVSRNPRLLENFKQTEPWTPSTSTPNEPNRKPSEFSDEELEVELFKLFLRNRFQPSFTVGVAADSWLAMMDRLLTLGNDCTEEI ACVKKNINLLIDIYYDALDAPKKGGRKIEVPEALKAELFPHFMEKHEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKHPCFDGEVHESCLVKWKGLYG QYRTEMRNALQAGKEKNNEANEVIKKYKEILYEAAEFNLSRRRDEEIFEEARALYQVTYNHAKRQGAVGKCGFAWRVAGLALCTLYVLKNQEERPLICSP SALKGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19930			RNA-dependent RNA polymerase f...		Potri.006G164400 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187900 [exp]	1.41	0.8879
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188100 [exp]	4.00	0.8434
AT1G21740			Protein of unknown function (D...		Potri.005G108400 [exp]	7.34	0.7780
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	9.74	0.7931
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.014G036900 [exp]	9.79	0.7825
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	11.95	0.7388
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	14.83	0.7502
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024900 [exp]	19.28	0.8112
					Potri.010G210400 [exp]	23.97	0.7072
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024800 [exp]	26.22	0.7809

Compare expression of checked genes

Potri.006G164400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.