Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46620 62 / 1e-12 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G64920 57 / 5e-11 CIP8 COP1-interacting protein 8 (.1) AT3G30460 55 / 1e-10 RING/U-box superfamily protein (.1) AT3G19950 56 / 2e-10 RING/U-box superfamily protein (.1) AT1G60360 55 / 3e-10 RING/U-box superfamily protein (.1) AT2G44330 54 / 3e-10 RING/U-box superfamily protein (.1) AT3G60080 55 / 5e-10 RING/U-box superfamily protein (.1) AT3G10815 54 / 6e-10 RING/U-box superfamily protein (.1) AT1G68180 54 / 6e-10 RING/U-box superfamily protein (.1) AT5G59550 54 / 7e-10 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G086500 [exp] 58 / 2e-11 AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1) Potri.010G133700 [exp] 56 / 5e-11 AT3G61460 66 / 4e-14 brassinosteroid-responsive RING-H2 (.1) Potri.013G116000 [exp] 57 / 6e-11 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 57 / 1e-10 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.005G062400 [exp] 56 / 1e-10 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 56 / 2e-10 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.010G201300 [exp] 56 / 2e-10 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.001G231000 [exp] 55 / 2e-10 AT3G60080 100 / 3e-25 RING/U-box superfamily protein (.1) Potri.010G133300 [exp] 54 / 2e-10 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043027 [exp] 83 / 7e-22 AT4G26400 57 / 3e-10 RING/U-box superfamily protein (.1.2) Lus10002637 [exp] 58 / 4e-11 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 58 / 5e-11 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10040783 [exp] 56 / 3e-10 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 54 / 4e-10 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10040278 [exp] 54 / 1e-09 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010179 [exp] 54 / 1e-09 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10017383 [exp] 52 / 1e-09 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10024372 [exp] 54 / 2e-09 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 53 / 2e-09 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G164516.1 pacid=42767384 polypeptide=Potri.006G164516.1.p locus=Potri.006G164516 ID=Potri.006G164516.1.v4.1 annot-version=v4.1 ATGGCATCAAACCCTTTTTCGAGCTGTCTAATCGATACGAGCTTTGATCTCGATGAGGCCCTAACCCTGCCTCAGAATTTAAGCCAACAAATCACATATT CAAACTCTACCATTGTAGCTGATATGCCCACGGCACTTACTACAGGTGATGCTGTTTGCGCAGTTTGCATGGAGGGTTTCCAGTCAGGTATAGGCGGTAA AAAAGTCCCATGTGGGCATGTCTACCATGAAGCTTGCATCTCCGCCTTGCTCTCCCACCGCCACTCTTGTCCTCTCTGCCGCTGTGACATCTCCGGCTAG
AA sequence Show only first row Show all	>Potri.006G164516.1 pacid=42767384 polypeptide=Potri.006G164516.1.p locus=Potri.006G164516 ID=Potri.006G164516.1.v4.1 annot-version=v4.1 MASNPFSSCLIDTSFDLDEALTLPQNLSQQITYSNSTIVADMPTALTTGDAVCAVCMEGFQSGIGGKKVPCGHVYHEACISALLSHRHSCPLCRCDISG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	2.44	0.9217
					Potri.002G068501 [exp]	2.82	0.9121
AT3G06880			Transducin/WD40 repeat-like su...		Potri.008G220800 [exp]	3.74	0.8233
AT1G49800			unknown protein		Potri.001G299900 [exp]	4.00	0.8195
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	4.69	0.8015
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Potri.009G078000 [exp]	5.00	0.7975
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	5.47	0.8820
AT5G17680			disease resistance protein (TI...		Potri.019G070700 [exp]	5.65	0.8677
AT1G49570			Peroxidase superfamily protein...		Potri.004G144600 [exp]	7.74	0.8516
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G164600 [exp]	7.93	0.8017	SAUR68

Compare expression of checked genes

Potri.006G164516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.