Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15450 333 / 2e-112 Senescence/dehydration-associated protein-related (.1) AT3G21600 323 / 9e-109 Senescence/dehydration-associated protein-related (.1.2) AT4G35985 177 / 2e-51 Senescence/dehydration-associated protein-related (.1) AT3G51250 164 / 3e-46 Senescence/dehydration-associated protein-related (.1) AT2G17840 161 / 3e-45 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT3G21590 78 / 7e-17 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087500 [exp] 432 / 1e-151 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 196 / 7e-59 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 188 / 1e-55 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 166 / 5e-47 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012957 [exp] 342 / 6e-117 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 341 / 5e-116 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 328 / 1e-110 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10034970 [exp] 206 / 3e-64 AT4G15450 178 / 1e-53 Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 179 / 3e-52 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 179 / 8e-51 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 156 / 2e-43 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 142 / 1e-40 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 139 / 3e-37 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 108 / 1e-26 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [poplar] [flax] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Potri.006G164748.1 pacid=42767216 polypeptide=Potri.006G164748.1.p locus=Potri.006G164748 ID=Potri.006G164748.1.v4.1 annot-version=v4.1 ATGGGCTTTTTCCGGCATGGTGGGCCTGAAGTCACACTATCGCCGAAACAGAAGAACTCAGAAACCAAACCTATCAACCAAAAAGTTCTTTTGCAGTTTC CAGGATGCACAGTTTATCTGATGGATGAAGGAGAAGCTCTAGAACTTGCTAAGGGCAAATTCACGATTGCTCGTGTCTTGGACAAGAGTGTTTCTATTGC TACCAGAATAAAAGCTGGTGATCTCCAGTGGCCACTGACAAAAGATGAGCCAGTTGTGAAGCTTGATTCTCTCAACTATTTGTTTTCTTTACCAATGATG GATGGTGGTTCTCTGAGCTACGGAGTTACTTTTTCAGAACAGTATCGTAGCAGTTTGTCCTCGCTTGATTCATTTCTAAGTGAACACTCATGTTTCTCTG CCTCTACAACAACTAGGACTAAAAATATTGATTGGAAACAGTTTGCTCCTAGAATTGAAGATTATAATAATGCCTTGGCCAAGGCTATTGCTCAGGGTAC AGGTCAGATTGTCAAGGGTATCTTCATATGTAGCAACATTTATAGCACTCAGGTTCGCAATGTTGGAGAAATGCTTTTAACTCGTGCTGCAGAGGAGGAA AATGGTTTCAAAGCTCGTGAGATTAACAGAAATACGAATGATGGAGACACAAACAAGAGTAGAGCCAACCAAAGCTTAAAACGCGTGAGAAATTTATCCA AGATGACAGAAAATCTTAGCAAAGTCACACTTGATGTTGTTGGGGCTGCCACTGGATCTGTGATGACACCCATGGTAAATTCCCAGGCAGGAAAGAAACT CCTAGCTTCGGTTCCAGGCGAGGTCCTCTTTGCTTCACTCGATGCTGTTAATAAGATTCTATCCGCAGCTGAAGTTGCTGAAAAACAAGTTCTTTCTGCA ACCTCCATTGCCACCACTAGAATTGTCACTGACAGGTTAGGTGAGAATGCAGGGGAAATTGCAGAGGATGTGCTTGCGACTACTGGCCATTGTACCAACA CTGCTTGGAATCTAATCAAGATAAGAAAGGCCATCAATCCAGCATCATATGATTCAACAGGAATACTAAGGAATGCAGGAAAGGCGAAAATATAG
AA sequence Show only first row Show all	>Potri.006G164748.1 pacid=42767216 polypeptide=Potri.006G164748.1.p locus=Potri.006G164748 ID=Potri.006G164748.1.v4.1 annot-version=v4.1 MGFFRHGGPEVTLSPKQKNSETKPINQKVLLQFPGCTVYLMDEGEALELAKGKFTIARVLDKSVSIATRIKAGDLQWPLTKDEPVVKLDSLNYLFSLPMM DGGSLSYGVTFSEQYRSSLSSLDSFLSEHSCFSASTTTRTKNIDWKQFAPRIEDYNNALAKAIAQGTGQIVKGIFICSNIYSTQVRNVGEMLLTRAAEEE NGFKAREINRNTNDGDTNKSRANQSLKRVRNLSKMTENLSKVTLDVVGAATGSVMTPMVNSQAGKKLLASVPGEVLFASLDAVNKILSAAEVAEKQVLSA TSIATTRIVTDRLGENAGEIAEDVLATTGHCTNTAWNLIKIRKAINPASYDSTGILRNAGKAKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15450			Senescence/dehydration-associa...		Potri.006G164748 [exp]	0	1
					Potri.010G132101 [exp]	1.00	0.9647
AT4G21310			Protein of unknown function (D...		Potri.004G031200 [exp]	1.41	0.9568
					Potri.014G030600 [exp]	1.73	0.9548
AT3G21690			MATE efflux family protein (.1...		Potri.004G016400 [exp]	2.00	0.9540
					Potri.002G120651 [exp]	5.09	0.9190
					Potri.010G132000 [exp]	6.00	0.9334
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.018G031600 [exp]	6.48	0.9387
					Potri.010G047000 [exp]	6.70	0.9179
AT1G69510			cAMP-regulated phosphoprotein ...		Potri.010G167000 [exp]	8.66	0.9059
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	8.94	0.9345

Compare expression of checked genes

Potri.006G164748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.