Plant FIBer expression Database

Potri.006G164864 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19880 854 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G087700
[exp]
958 / 0 AT2G19880 881 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034973
[exp]
892 / 0 AT2G19880 886 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Lus10012951
[exp]
840 / 0 AT2G19880 830 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF13506 Glyco_transf_21 Glycosyl transferase family 21
Representative CDS sequence
>Potri.006G164864.1 pacid=42770074 polypeptide=Potri.006G164864.1.p locus=Potri.006G164864 ID=Potri.006G164864.1.v4.1 annot-version=v4.1
ATGACGGGGAAAGAGGCGATGGATAGTGCCTTCCTCTTCTCCATGAGTAAAGCGTTCTGTAGTCCTCTCGCTGTTTTTATTCAGATCCAGGGATGTGCAA
TTTGCTTACTTCTGGCTCTTGGGTGGGCTTGTGCTGCCTATGTCAGGAATAGAGAGATCAAACGGATAAAAGATAGTATGAGAGCTGGCAACAGCTTTTC
ATTTCTTTGCCATGACATTACTGAACTTGAGCACTCTTATCAGACCAATCTGCCTAGAGTTACAGTAGTTATGCCTTTAAAGGGGTTTGGAGAACATAAT
CTGCACAATTGGAGAAGTCAAGTAACATCTCTTTATGGAGGTCCGCTAGAATTCCTTTTTGTTGTGGACAGTACAGAAGACCCTGCTTACTATGCTGTTT
CTAGCTTGATATCAGATTTCAAGGATAGTATCGATGCTAGAATTGTTGTAGCTGGCTTATCAACGACCTGTAGTCAGAAAATTCACAACCAGTTGATTGG
TGTGGAGCAAATGCACAAAGAAAGCAAGTATGTATTGTTTTTGGATGATGATGCTAGGCTGCACCCTGGTTCAATTGGTGCCCTAACTGCTGAGATGGAA
AAAAATCCTGAGATATTTATTCAAACTGGCTATCCTCTTGATCTACCTTCTGGGAGCTTAGGAAGTTACTGCATCTATGAATATCACATGCCTTGTTCGA
TGGGGTTTGCCACTGGTGGAAAAACATTCTTTCTATGGGGTGGTTGCATGATGATGCATGCTGATGATTTTAGGTATGACCGCTGTGGTGTGGTATCTGG
TCTTCGAGATGGTGGATATTCAGATGATATGACTCTTGCAGCTTTAGCAGGGGCTCATAAGAGGCTCATTACATCTCCTCCTGTTGCTGTTTTTCCTCAC
CCCCTTTCTAGTGATCTTAGCTTTTCAAGGTACTGGAATTACTTGAGGAAGCAAACATTTGTTTTAGAATCATATACATCTAAGGTTAACTGGATAATGA
ACCGTGCATTATTTTCTTCTCACTGCTATTTATCATGGGGATTCGTAGTGCCATACTTGATGGCCATGACCCATGTTGCAGCGGCACTGCAAATCTATAT
CCAAGGATATGCACGTGAGGAAACTACATTTGTTTCTAATGGGTTGTTACTAGTCACCTGCCTAGCTGCATGCACCTTTATAGAACTTTTTTCAATGTGG
AACTTGACGAGGATAGAAGTTCAACTATGCAACATGCTTTCTCCTGAGGCACCCCGACTCTCCCTTGCTACTTATAACTGGGTCCTAGTATTTATTGCAA
TGCTTGTGGACAACTTCTTATATCCAATATCTGCATTCCGTTCCCATTTTTCTCAGTCTATCAATTGGTCTGGTATCCGGTACCACTTGAAGGATGGAAA
GATAAGCAAGATTGAAAGAAGTACGGGCCCCAAATACACAGACCTAGCGTGGAAAAAATTATATGGGAAGAAGGGAGCTCCTCCCAAAACATCATTTCTT
GGTGCTTTGCTTAGAAGTTTGGAACAGTGGCGACAACCTAAGAAATTTGATGGCTAG
AA sequence
>Potri.006G164864.1 pacid=42770074 polypeptide=Potri.006G164864.1.p locus=Potri.006G164864 ID=Potri.006G164864.1.v4.1 annot-version=v4.1
MTGKEAMDSAFLFSMSKAFCSPLAVFIQIQGCAICLLLALGWACAAYVRNREIKRIKDSMRAGNSFSFLCHDITELEHSYQTNLPRVTVVMPLKGFGEHN
LHNWRSQVTSLYGGPLEFLFVVDSTEDPAYYAVSSLISDFKDSIDARIVVAGLSTTCSQKIHNQLIGVEQMHKESKYVLFLDDDARLHPGSIGALTAEME
KNPEIFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRYDRCGVVSGLRDGGYSDDMTLAALAGAHKRLITSPPVAVFPH
PLSSDLSFSRYWNYLRKQTFVLESYTSKVNWIMNRALFSSHCYLSWGFVVPYLMAMTHVAAALQIYIQGYAREETTFVSNGLLLVTCLAACTFIELFSMW
NLTRIEVQLCNMLSPEAPRLSLATYNWVLVFIAMLVDNFLYPISAFRSHFSQSINWSGIRYHLKDGKISKIERSTGPKYTDLAWKKLYGKKGAPPKTSFL
GALLRSLEQWRQPKKFDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G19880 Nucleotide-diphospho-sugar tra... Potri.006G164864
[exp]
0 1
AT3G19820 CBB1, EVE1, DW1... ENHANCED VERY-LOW-FLUENCE RESP... Potri.008G084800
[exp]
4.47 0.9093 DIM.2
AT3G08600 Protein of unknown function (D... Potri.006G111700
[exp]
6.70 0.8902
AT1G73360 HD ATHDG11, HDG11,... ENHANCED DROUGHT TOLERANCE 1, ... Potri.012G038500
[exp]
11.48 0.8842
AT1G07420 SMO2-1, ATSMO1,... Arabidopsis thaliana sterol 4-... Potri.001G245300
[exp]
13.85 0.9092 SMO2.1
AT1G27460 NPGR1 no pollen germination related ... Potri.014G016000
[exp]
14.38 0.8825 Pt-NPGR1.2
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Potri.009G093900
[exp]
15.09 0.8868
AT4G32830 ATAUR1 ataurora1 (.1) Potri.006G235000
[exp]
17.14 0.9132
AT5G12930 unknown protein Potri.001G017100
[exp]
18.08 0.9114
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Potri.002G080000
[exp]
21.26 0.9099
AT2G02480 STI STICHEL, AAA-type ATPase famil... Potri.003G044900
[exp]
23.95 0.8912 STI.5

Potri.006G164864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.