Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PPD1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25880 743 / 0 APUM6 pumilio 6 (.1.2.3) AT3G20250 680 / 0 APUM5 pumilio 5 (.1) AT2G29200 467 / 5e-149 APUM1 pumilio 1 (.1) AT2G29190 467 / 6e-149 APUM2 pumilio 2 (.1.2) AT3G10360 466 / 3e-148 APUM4 pumilio 4 (.1) AT2G29140 463 / 1e-147 APUM3 pumilio 3 (.1) AT1G22240 185 / 7e-50 APUM8 pumilio 8 (.1) AT1G78160 180 / 2e-47 APUM7 pumilio 7 (.1) AT5G56510 171 / 1e-44 APUM12 pumilio 12 (.1) AT4G08840 162 / 6e-42 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009900 [exp] 1560 / 0 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.008G004300 [exp] 838 / 0 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.010G201100 [exp] 496 / 8e-160 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 488 / 9e-157 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 480 / 9e-153 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 480 / 1e-152 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 467 / 3e-148 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 452 / 1e-142 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.003G222300 [exp] 198 / 8e-53 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034808 [exp] 862 / 0 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 740 / 0 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10000516 [exp] 475 / 5e-160 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 497 / 5e-159 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10040782 [exp] 494 / 2e-158 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 488 / 1e-157 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 488 / 5e-157 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 483 / 9e-155 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 474 / 4e-151 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10038706 [exp] 466 / 3e-148 AT3G10360 928 / 0.0 pumilio 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.006G165100.6 pacid=42769115 polypeptide=Potri.006G165100.6.p locus=Potri.006G165100 ID=Potri.006G165100.6.v4.1 annot-version=v4.1 ATGGCAACGGAAAGTCCACTTAGAATGCCCTCGCACAAGGAGCCAGCAACCTTTGCACCACCAACTCCTAATATGGCAGTGGAGGAGTTGGGATTTCCTA GAAAGGGTCAAAGATTCCATGGAAGTGGGAGAGACACAGTCCCTAATCGAAGTGGAAGTGCACCCCCAAATATGGAAGGCTCCATTTTGGCCATAAACAA CCTCATTTTCCACCAAAATTCCAACCTTAATCCTAGGTTGGGGCGTTCAAATGATGCTCTTCAAGAGTTTGACTCAGAGAAGCAGTCATATGTATCTTAT TATGGTACTGGTGCCAACCCAAACACCTCACCCATCCCAAGGGAGAATCAGCTTGCAGAACACCATGCTGTTAAGTTTGGTACTAATTGGGGATTGACTC CAATAGATGACAGCAGTAACAGTTTCTTGCATTTGTCGCAAGGAGTACTTTCTACACACAAGGAAGAGTTGGAGGATGATCACTCACCCAAGCAGCCCGT GGAAAGTTTAGTCAACACAACAAATGGGTTTTGGTCTGGTGAGGCTGCTGCTTCATTGGCAGGCCAATCCAAAAGCTTGGTTGATTTAATTCAGGAGGAT TTCCCCCGCACTCCATCTCCTGTATATAACCAGTCTCGCTCCTTAAGCTCTGGAATGACAGATGAACCTGCTGATCATGATATTGTTTCTAGTTCCTTGC CTGACCCCACTGTTAGCACATCCAATGCTGTTCCATCAATTCTAGGTACAAAAACTGTGGGGCTACCTTTGAATGCTGATCCCCTAGTTGCTCCTGTTTC AAGCTCATTGTCTCGTAATCGTACAGGAACCATACAACCCAAACCACCTCGTAGCAAAGGATTTTTAAATACTGCAGACGTCAACGTTATTGAACCTGGA ATGAAGGATCTTAATATATCTAACCTTCAGAATCCCAAGGTGCAAACAAATCAAGAGCAGTGGCAACACAGCTACCAAAGCCAAGTGCAGCAACACCAAG TCCACCAACAGCCGAACAATTCATTTCAAGTTCAAAGTGCCAAGTCTCAAATGGGTCATCAAAATTCTGCATACATTGATGTGGACCAAGCTCTCCATGG GCCATCAAAGTTCTCAGCGGAGGTGCAGCCGGTATTGCAGTCATCTGGGTTCACACCTCCTCTTTATGCAACAGCTGGCTACATGACTTCACCAAATCCA TTTTACCCAAATCTACAGGCTCCAGGATTATGTGCTCCACAATATGGCACAGGGGGGTATGCTCTGAATTCAAATGTTATTCCTCCGTATGTTGCTGGAT ACCCCCCTCATGGTACAGTTCCAATGGTTTTTGATGGCTCCGTTAGTCAAAACTTTAATGCCGGAATGTCTGGGGCTTCAAGCGGGGGAGGCATTGCCCA CGGAGCTGATGTGCAACACTATAACAAGTTCTTTGGGCAGCTTGGGTATGCAGTTCAACCTTCATTTACTGATCCTGTATATATGCAATACTATCAACAG CCTTATGGACTGGCATATAATACGTCTAGTCAATTTGATCCATTGGCATCTGGAGGTGGTGTTATTGGGAGACAAAACAATGCTCCTGACTCAAAGAAAG GATCTGAGGTTGCTGCTGGCTTGGAGGATCAGAAATTGCTTCACCAGAGAGGTGGAGCAGGTAATCTGAATCAAGGTAGAGGGCAGATGATGAATCTTCC CTATTTTGGAAATTCTCCAAACATGGGTATATTGCAGTACCCCACATCACCACTTGCTAGCCCTGTTTTTCCAGGATCCCCAGTGGGGGGCACTGGTATT TCTGGAGGGAGAAATGAATTGAGGTTCTCGCCAGGCAGTGGAAGATATGCGGCTGTACATTCTGGTTGGCGAGGTCAAAGAGGATCAGAGAGTTTTAATG ACCCTAAAATATATAATTTTCTTGAGGAGTTGAAATCTGGCAAAGGCCGCAGATTTGAGTTGTCTGATATTGTAGGGAACATTATTGAATTTAGTGCTGA TCAACATGGTAGCCGATTTATTCAGCAGAAGTTAGAGAATTGCAATGCTGAAGAGAAGGCATCTGTATTTAAAGAAGTTCTTCCTTATGCTTCCAAATTA ATGACTGATGTTTTTGGCAACTATGTTATTCAGAAATTTTTTGAGTATGGAAGCACTGAGCAGAGGAAGGAACTTGCTATTCAGCTTACTGGTCAGATTT TACATCTAAGTTTGCAGATGTATGGCTGTCGGGTAATCCAAAAGGCACTTGATGTGATTGAACTTGATCAAAAAGCACAGCTTGTTCGTGAATTGGATGG ACATGTTATGAAGTGTGTACGTGATCAGAATGGTAATCATGTCATACAGAAGTGCATTGAGAGTGTTCCGGCAGAAAAAATTGGATTTATAATCTCTGCC TTCCGTGGTGAAGTTGCAACACTTTCCATGCATCCTTATGGTTGCCGTGTCATACAGAGAGTTCTAGAGCGTTGTGCGGATGAGCTGCAATGTCAGTTCA TAGTGGATGAGATCTTGGAGTCTGTATGCATTCTTGCGCAAGACCAGTATGGAAATTATGTTACTCAGCATGTATTGGAGAGGGGAAAACCTCAAGAAAG ATGCCAAATTATTAGCAAATTGTCGGGGCATATTGTTACACTCAGCCAGCATAAGTTTGCGTCCAATGTTGTTGAGAAATGTTTGGAGTATGGTGGTGCC ACTGAGCGGGAAATAATAATTCAGGAGATTCTTGGACAAAATGAAGGAAACGATAATCTATTGATAATGATGAAGGACCAATATGCAAATTATGTGGTCC AGAAGATTCTTGACACTTGTACTGATATTCAGCGGGCAATGTTGCTTAATCGTATAAGAACACATGTGCATGCTCTGAAGAAATATACTTATGGGAAGCA CATTGTTGCTAGGTTTGAACAGCAATTTGGTGAAGAGGGACAAACATCATGA
AA sequence Show only first row Show all	>Potri.006G165100.6 pacid=42769115 polypeptide=Potri.006G165100.6.p locus=Potri.006G165100 ID=Potri.006G165100.6.v4.1 annot-version=v4.1 MATESPLRMPSHKEPATFAPPTPNMAVEELGFPRKGQRFHGSGRDTVPNRSGSAPPNMEGSILAINNLIFHQNSNLNPRLGRSNDALQEFDSEKQSYVSY YGTGANPNTSPIPRENQLAEHHAVKFGTNWGLTPIDDSSNSFLHLSQGVLSTHKEELEDDHSPKQPVESLVNTTNGFWSGEAAASLAGQSKSLVDLIQED FPRTPSPVYNQSRSLSSGMTDEPADHDIVSSSLPDPTVSTSNAVPSILGTKTVGLPLNADPLVAPVSSSLSRNRTGTIQPKPPRSKGFLNTADVNVIEPG MKDLNISNLQNPKVQTNQEQWQHSYQSQVQQHQVHQQPNNSFQVQSAKSQMGHQNSAYIDVDQALHGPSKFSAEVQPVLQSSGFTPPLYATAGYMTSPNP FYPNLQAPGLCAPQYGTGGYALNSNVIPPYVAGYPPHGTVPMVFDGSVSQNFNAGMSGASSGGGIAHGADVQHYNKFFGQLGYAVQPSFTDPVYMQYYQQ PYGLAYNTSSQFDPLASGGGVIGRQNNAPDSKKGSEVAAGLEDQKLLHQRGGAGNLNQGRGQMMNLPYFGNSPNMGILQYPTSPLASPVFPGSPVGGTGI SGGRNELRFSPGSGRYAAVHSGWRGQRGSESFNDPKIYNFLEELKSGKGRRFELSDIVGNIIEFSADQHGSRFIQQKLENCNAEEKASVFKEVLPYASKL MTDVFGNYVIQKFFEYGSTEQRKELAIQLTGQILHLSLQMYGCRVIQKALDVIELDQKAQLVRELDGHVMKCVRDQNGNHVIQKCIESVPAEKIGFIISA FRGEVATLSMHPYGCRVIQRVLERCADELQCQFIVDEILESVCILAQDQYGNYVTQHVLERGKPQERCQIISKLSGHIVTLSQHKFASNVVEKCLEYGGA TEREIIIQEILGQNEGNDNLLIMMKDQYANYVVQKILDTCTDIQRAMLLNRIRTHVHALKKYTYGKHIVARFEQQFGEEGQTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	0	1	Pt-PPD1.4
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	1.00	0.9441
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.005G026800 [exp]	2.00	0.9423
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	2.44	0.9344
AT4G16280		FCA	RNA binding;abscisic acid bind...		Potri.010G147900 [exp]	4.00	0.9281
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	4.89	0.9116
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	6.32	0.9207
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	8.77	0.9101
AT1G36990			unknown protein		Potri.002G089100 [exp]	9.74	0.8880
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	9.79	0.9046
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Potri.003G194600 [exp]	10.00	0.8391

Compare expression of checked genes

Potri.006G165100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.