Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19070 595 / 0 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G48930 349 / 6e-117 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 266 / 3e-84 HXXXD-type acyl-transferase family protein (.1) AT3G48720 213 / 4e-64 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 211 / 2e-63 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 206 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT1G65450 172 / 1e-48 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G03390 165 / 8e-46 HXXXD-type acyl-transferase family protein (.1) AT5G17540 157 / 9e-43 HXXXD-type acyl-transferase family protein (.1) AT5G23940 157 / 1e-42 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G109900 [exp] 757 / 0 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 355 / 3e-119 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 355 / 5e-119 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 353 / 2e-118 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 346 / 1e-115 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 341 / 1e-113 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 328 / 9e-109 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G326300 [exp] 210 / 8e-63 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 209 / 1e-62 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001282 [exp] 555 / 0 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 509 / 4e-179 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 506 / 7e-178 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005360 [exp] 449 / 2e-155 AT2G19070 424 / 9e-146 spermidine hydroxycinnamoyl transferase (.1) Lus10021393 [exp] 364 / 2e-123 AT2G19070 327 / 5e-109 spermidine hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 333 / 9e-111 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10022163 [exp] 325 / 3e-107 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10010786 [exp] 323 / 2e-106 AT5G48930 451 / 5e-157 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 295 / 2e-95 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 275 / 6e-88 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.006G165200.1 pacid=42766919 polypeptide=Potri.006G165200.1.p locus=Potri.006G165200 ID=Potri.006G165200.1.v4.1 annot-version=v4.1 ATGGTGGTGGTGGTGGTGACAATCAAAGGCTCTTATATAGTGAAACCTGCCAAACCAACATGGACCGGCCGCGTTTCCCTTTCTGAGTTGGATCAAATTG GAACAATAATGTATGTTCCCACTATCTACTTCTACAAACCATCGCCAAACTGGCTAACACCATCCAATGATGTCGTCAATGACCTTAAAGATTCATTGAG AGATGTTTTGGTGCCATTTTATCTACTAGCTGGCCGTTTACACTGGATAGGTCGTGGCCGCCTCGAGCTTGAGTGCAATGCCATGGGTGTTATGTTCACT GAGGCTGAATCTGAATCCAAGCTTGAAGATCTTGGCGACTTCCTACCGTCTTCAGAGTACAAATACCTAATCCCAAATGTTGACTATACCGTTCCAATAC ATGACTTGCCTCTATTATTAGTGCAACTCACCAAGTTCCAATGTGGTGGTATTAGCCTAAGTTTAACAATATCTCATGCTGTTGTTGATGGGCAAAGTGC TCTTCACTTTATGTCAGAGTGGGCAAGAATCGCCCGTGGCGAGCCATTAGGCGTGGTTCCTTTTCTTGACCGAAAGGTCTTGCGAGCTAGGGATCCTCCA ATAGCTTCACAGTTTCACCATGCGGAGTTTGATCTTCCACCATTACTATTGGGGCAGTTGAATAACGCTGAAGAGAGAAAAAAGAAGGCAACTGTAGCCA TGTTGAGGCTAACCAAAGTTCAGGTTGAAAATTTAAAGAATGTGGCAAATGAGGAAAGAATCAGTACAGATAGTGGTCGTGGTTATACTAGATATGAGAC CTTGTCTGGACATGTTTGGAGGTCTGTTTGTAAGGCTCGTGGACACAACCCAGAGCAGCCAACTGCTCTAGGTGTTTGTGTTGATTCACGTAAACGGATG CAGTCACCTTTGCCTGATGGTTACCTTGGCAATGCTACTCTTAATGTGATCGCGGTTAGTCACGCCGGTGAGCTCATGTCAAAGCCCTTGGGATATGCCG CAAGAAAGATAAGGGAAGCAATTGAAACGGTGACAAATGCGTATGTGAGATCTGCGATTGATTTCTTGAAGAATCAACCAAACTTGACAAGGTTTCAAGA CATTCACGCACTAGGAGGCACTGAAGGGCCCTTCTACGGGAACCCAAATATCGGGGTGGTTAGTTGGTTAACCCTACCTATTTATGGCCTTGATTTTGGG TGGGGAAAGGAGATTTATATGGGTCCAGGAACTCATGATTTTGATGGGGACTCATTGCTTCTGCCAAGTCCTAATGGAGACGGGTCTGTAATATTAGCAA TATGTTTGCAGGTGGCTCATATGGAAGCTTTTAAGAAATACTTCTATGAAGATATATAA
AA sequence Show only first row Show all	>Potri.006G165200.1 pacid=42766919 polypeptide=Potri.006G165200.1.p locus=Potri.006G165200 ID=Potri.006G165200.1.v4.1 annot-version=v4.1 MVVVVVTIKGSYIVKPAKPTWTGRVSLSELDQIGTIMYVPTIYFYKPSPNWLTPSNDVVNDLKDSLRDVLVPFYLLAGRLHWIGRGRLELECNAMGVMFT EAESESKLEDLGDFLPSSEYKYLIPNVDYTVPIHDLPLLLVQLTKFQCGGISLSLTISHAVVDGQSALHFMSEWARIARGEPLGVVPFLDRKVLRARDPP IASQFHHAEFDLPPLLLGQLNNAEERKKKATVAMLRLTKVQVENLKNVANEERISTDSGRGYTRYETLSGHVWRSVCKARGHNPEQPTALGVCVDSRKRM QSPLPDGYLGNATLNVIAVSHAGELMSKPLGYAARKIREAIETVTNAYVRSAIDFLKNQPNLTRFQDIHALGGTEGPFYGNPNIGVVSWLTLPIYGLDFG WGKEIYMGPGTHDFDGDSLLLPSPNGDGSVILAICLQVAHMEAFKKYFYEDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Potri.006G165200 [exp]	0	1
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.008G020300 [exp]	2.00	0.7779
AT5G05800			unknown protein		Potri.001G195601 [exp]	11.48	0.7968
					Potri.001G103200 [exp]	18.46	0.7422
AT1G15780			unknown protein		Potri.003G026510 [exp]	18.76	0.7899
					Potri.008G213423 [exp]	20.12	0.7828
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	33.46	0.7487
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.006G266200 [exp]	44.82	0.7628
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Potri.003G087900 [exp]	45.19	0.7497
AT5G41685			Mitochondrial outer membrane t...		Potri.018G145502 [exp]	46.31	0.7040
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.017G103401 [exp]	62.44	0.6588

Compare expression of checked genes

Potri.006G165200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.