Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30160 1508 / 0 ATVLN4, VLN4 villin 4 (.1.2) AT5G57320 1381 / 0 VLN5 villin 5, villin, putative (.1) AT2G41740 843 / 0 ATVLN2, VLN2 villin 2 (.1) AT3G57410 821 / 0 ATVLN3, VLN3 villin 3 (.1) AT2G29890 812 / 0 ATVLN1, VLN1 villin 1, villin-like 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G089700 [exp] 1798 / 0 AT4G30160 1464 / 0.0 villin 4 (.1.2) Potri.009G045000 [exp] 890 / 0 AT2G29890 1101 / 0.0 villin 1, villin-like 1 (.1.2.3) Potri.006G050200 [exp] 872 / 0 AT2G41740 1340 / 0.0 villin 2 (.1) Potri.016G056200 [exp] 834 / 0 AT2G41740 1248 / 0.0 villin 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015333 [exp] 1453 / 0 AT4G30160 1395 / 0.0 villin 4 (.1.2) Lus10025461 [exp] 904 / 0 AT4G30160 959 / 0.0 villin 4 (.1.2) Lus10035450 [exp] 876 / 0 AT2G41740 1402 / 0.0 villin 2 (.1) Lus10005861 [exp] 842 / 0 AT2G29890 1049 / 0.0 villin 1, villin-like 1 (.1.2.3) Lus10031066 [exp] 820 / 0 AT2G41740 1320 / 0.0 villin 2 (.1) Lus10015334 [exp] 144 / 4e-40 AT4G30160 132 / 3e-37 villin 4 (.1.2) Lus10015332 [exp] 93 / 2e-22 AT4G30160 100 / 4e-26 villin 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF02209 [poplar] [flax] VHP Villin headpiece domain
Representative CDS sequence Show only first row Show all	>Potri.006G165300.5 pacid=42769202 polypeptide=Potri.006G165300.5.p locus=Potri.006G165300 ID=Potri.006G165300.5.v4.1 annot-version=v4.1 ATGGCTGTTTCCATGAGAGATTTAGACTCAGCCTTTCAGGGAGCTGGACAAAAGGCTGGACTTGAAATATGGCGGATTGAAAACTTTCGTCCTGTTCCTG TGCCAAAGTCCTCTCATGGAAAATTTTTTATGGGGGACTCCTATGTAATTTTGCAGACGACTGCACTAAAAAGCGGTTCCTTACGTCATGATATTCATTA TTGGCTAGGTAAAGATACCTCTCAGGATGAAGCAGGTGCTGCTGCCATTAAAACAGTTGAACTAGATGCCGCTCTTGGAGGCCGTGCTGTACAGTATCGT GAAGTACAGGGCCATGAAACAGAGAAGTTCTTATCTTATTTTAAACCATGTATTATACCACAAAAAGGTGGAGTTGCGTCTGGCTTCAAACATCCCGAGG CTGAGGAACACCAGACGTGCTTGTTTGTTTGCACAGGAAAACATGTTGTCCATGTGAACGAGGTTCCTTTTGCTCGATCCTCACTCAACCATGATGATAT TTTTATTCTTGATACGAAGTCAAAAATTTTTCAATTTAATGGTTCCAACTCATCCATTCAAGAGAGAGCTAAAGCTTTAGAAGTGGTCCAGTACATCAAA GATACTTATCATGATGGAAAATGTGAGGTGGCTGCTGTTGAGGATGGAAAATTGATGGCTGATGCTGAAACTGGAGAGTTCTGGGGTTTCTTTGGTGGCT TTGCTCCACTTCCAAGAAAAACAGCTAGTGATGAGGATAAGACTGATGTTTCTCTTTCTACCAAGCTGTTTTGTGTTGAGAAGGGGCAGGCAGAACCTGT TGAAACTGATTCTTTGACAAGGGAGTTTCTAGACACCAATAAGTGTTATATTCTAGATTGTGGAGCGGAAGTGTTTGTATGGATGGGGAGAAACACTCCT CTTGATGAAAGGAAAAGTGCCAGTGTAGCAGCAGAAGAGTTAGTCCGAGCTGTTGAACGACCAAAATCCCGCGTTGTTCGTGTAATTGAGGGGTTTGAGA CTGTGATGTTTAGATCAAAATTTGAATCATGGCCCCAAACAACTAATGTGACTGTGTCTGAGGATGGTAGAGGCAAAGTTGCAGCTCTTTTAAGACGCCA GGGGGTTAATGTCAAGGGTCTGTTAAAAACTGCTCCTGCTAAAGAAGAACCTCAACCGTACATTGATGTTACTGGAAATTTGCAGGTTTGGAGTGTAAAT GGCCAGGAGAAGGTTCTCATTCCTGCTGCAGACCAGTCCAAATTTTACAGTGGAGGTTGCTACATTTTTCAGTATTCATATCCAGGAGAAGACAGGGAGG AATATCTTATTGGAACATGGTTTGGGAAGAAGAGTGTTAAGGAGGAAAGAGCTTCTGCTATTTCACTGGTGAGCAAGATGGTTGAATCATTAAAGTTTCT ACCTGCCCAGGCTCGAATCTATGAAGGAAATGAACCAATTCAGTTCTTTTCAATCTTCCAGAGCTTCCTTGTCTTCAAGGGAGGTCATAGCTCTGGATAC AAGAATTACATTGAAGAGAATGAACTCCCAGATGAGACATACAAGGAGGAAGGCATTGCATTATTCAGGGTTCAGGGTTCCGGACCTGATAATATGCAAG CTCTACAAGTTGAACCAGTTGCATCATCACTGAATTCCTCCTACTGTTACATATTACATAATGACTCCTCTGTTTTTACATGGTCTGGAAACCTTACTAG TTCAGAGGACCAGGAACTTATCGAAAGGCAGCTGGATTTGATAAAGCCAAATATGCAGTCAAAACCACAAAAGGAAGGTTCAGAAGCTGAACATTTTTGG GATTTGTTAGGAGGAAAATCTGAATATCCCAGTCAAAAACTTGCAAGGGAAGGTGAAAGCGATCCACACCTATTCTCATGCATATTCTCAAAAGGAAACC TGAAGGTGTCTGAGATATACAACTTCACCCAGGATGATTTAATGACTGAAGATATTTTCATCTTGGATTCTCACTCTGAGATCTTTGTCTGGGTGGGACA ACAGGTTGACTCCAAGAGCAAACTGCAAGCCTTAACTATTGGAGAGAAATTTCTTGAGCATGATTTTCTGTTAGAGAAGTTATCTAGTGAAACTCCAATA TATATTGTTATGGAAGGGAGTGAGCCACCATTCTTCACACGTTTCTTCACATGGGATTCTGCAAAATCTTTAATGCATGGAAACTCATTCCAGAGGAAAC TTGCGATTGTGAAAAATGGGGGTACTACACTTTTAGATAAACCCAAACGCAGAACACCTGTATCACATGGAGGCAGGTCCAGTGTACCTGACAAATCACA GCGTTCCAGAAGCATGTCTTTCAGCCCTGACAGAGTTCGTGTGAGGGGAAGGTCTCCAGCTTTTAGCGCTCTAGCTGCTAACTTTGAGAGCCCTAGTGCC AGAAACCTTTCAACTCCACCACCAGTTGTTAGAAAGGTATATCCAAAGTCTGTGAGCCCTGATTCAGCAAAACTGGCTTCCAATTCTTCAGCTATTGCAG CACTTACTGCAAGTTTTGAACAACCACCACCAGCACGACAAGTTATTATGCCTCGGTCTGTCAAAGCGAGCCCTGAGGCACCAAAATTGACACCTGAGTC AAACTCCAAAGAGAACTCTATGAGCAGCAGAATAGAATCCCTAACCATACAGGAGGATGTGAAAGAAGATGAAGCTGAAGATGAGGAAGGTCTCCCAATT TATCCATATGAAAGCCTTAAAGTTAACTCGTCAGATCCTGCAACTGAAATTGATGTGACCAAGCGAGAGACTTACCTGTCAGCAGTTGAGTTTAGGGAGA AATTTGGGATGGCAAAATATGCCTTCTATAAGTTGCCTAAATGGAAGCAGAATAAGCTTAAAATGGCCCTTCAACTGTTTTGA
AA sequence Show only first row Show all	>Potri.006G165300.5 pacid=42769202 polypeptide=Potri.006G165300.5.p locus=Potri.006G165300 ID=Potri.006G165300.5.v4.1 annot-version=v4.1 MAVSMRDLDSAFQGAGQKAGLEIWRIENFRPVPVPKSSHGKFFMGDSYVILQTTALKSGSLRHDIHYWLGKDTSQDEAGAAAIKTVELDAALGGRAVQYR EVQGHETEKFLSYFKPCIIPQKGGVASGFKHPEAEEHQTCLFVCTGKHVVHVNEVPFARSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIK DTYHDGKCEVAAVEDGKLMADAETGEFWGFFGGFAPLPRKTASDEDKTDVSLSTKLFCVEKGQAEPVETDSLTREFLDTNKCYILDCGAEVFVWMGRNTP LDERKSASVAAEELVRAVERPKSRVVRVIEGFETVMFRSKFESWPQTTNVTVSEDGRGKVAALLRRQGVNVKGLLKTAPAKEEPQPYIDVTGNLQVWSVN GQEKVLIPAADQSKFYSGGCYIFQYSYPGEDREEYLIGTWFGKKSVKEERASAISLVSKMVESLKFLPAQARIYEGNEPIQFFSIFQSFLVFKGGHSSGY KNYIEENELPDETYKEEGIALFRVQGSGPDNMQALQVEPVASSLNSSYCYILHNDSSVFTWSGNLTSSEDQELIERQLDLIKPNMQSKPQKEGSEAEHFW DLLGGKSEYPSQKLAREGESDPHLFSCIFSKGNLKVSEIYNFTQDDLMTEDIFILDSHSEIFVWVGQQVDSKSKLQALTIGEKFLEHDFLLEKLSSETPI YIVMEGSEPPFFTRFFTWDSAKSLMHGNSFQRKLAIVKNGGTTLLDKPKRRTPVSHGGRSSVPDKSQRSRSMSFSPDRVRVRGRSPAFSALAANFESPSA RNLSTPPPVVRKVYPKSVSPDSAKLASNSSAIAALTASFEQPPPARQVIMPRSVKASPEAPKLTPESNSKENSMSSRIESLTIQEDVKEDEAEDEEGLPI YPYESLKVNSSDPATEIDVTKRETYLSAVEFREKFGMAKYAFYKLPKWKQNKLKMALQLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.006G165300 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Potri.002G058300 [exp]	1.73	0.9137
AT1G21480			Exostosin family protein (.1.2...		Potri.002G072300 [exp]	4.47	0.9079
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	5.29	0.8987
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	7.14	0.9140
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	7.48	0.9041
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	8.36	0.9003
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	9.84	0.8643
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	11.40	0.9138	Pt-VLN4.2
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	16.61	0.9064
AT2G16405			Transducin/WD40 repeat-like su...		Potri.004G160000 [exp]	19.05	0.9000

Compare expression of checked genes

Potri.006G165300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.