Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57340 62 / 3e-11 unknown protein AT1G26620 45 / 6e-05 Plant protein of unknown function (DUF863) (.1) AT1G13940 44 / 0.0001 Plant protein of unknown function (DUF863) (.1) AT1G69360 43 / 0.0002 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090000 [exp] 380 / 6e-134 AT5G57340 72 / 8e-15 unknown protein Potri.008G092800 [exp] 49 / 4e-06 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 47 / 8e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011080 [exp] 41 / 0.0004 AT5G67390 91 / 7e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G165500.2 pacid=42769086 polypeptide=Potri.006G165500.2.p locus=Potri.006G165500 ID=Potri.006G165500.2.v4.1 annot-version=v4.1 ATGGGAACCAAACTTGAATATGCCATCAATCTTCTAGCAACTTCACACAATAGCAGTAGCGTTAGTGTACGTTGTGTGGATGACCTGGAATATTTGCAGA CCAGGGGTCTGAGTAAGGACCTTCAAGTTAGTGGGATAGACAAGTTTTGCAGCTCTATGGACAGGATGCCTGAGAAACACAACATAGACTTCATCAAGAA GACAATGCAGTTGCATGATGATATCTTCAAACAACAGTGGAACTTGCAGGTAAGGGAACTCCATAGGCTGTACAGTGTTCAAAAGATGTTGATGGATGAG TTGAACAAGAATGAAATTAAACAAGACAGGAAGTACTGGACTCCAATGACTAGTTCATATACTAACTACTCTCAATTCGCTAACCGGCCTAAATCAACAG AACAAACCACTTGTGATTATAGTTTCCTTGTTCAAAGACCGAGAGATGATCCAAGTTCAAGAGAAAGAAGTGGTAGCTGCTCAGATGAGACGATGAGATT AACAAGGGGATTCGATCTTGAAAGGCTTGCTGAGCATATATCAACTGGAGTTGGAGCCGTGGACGAGAACCAAGCTGGGCCAAGCACTTGTGCACCCCAA AAAGGAAAAATGAGCATAGATGGATCTGATGAAGATAGTGAAGTGGAGCTGACATTAAGCATCGGAGGTAGCACTACAAGCAAGAAGATATCCAAAAACT ACCAGACACTTGAGCTTGATTCTCCAGCCTCGTTTATATCTGAACGAGGAGAGGATTACAGCACTCCAACAACCCCAATGAGCAGCTCTAGTGCAACATG CGGTCAGGACAGAAAGCGGCCGCATTGGCTTTTCCAAAAAGTTTAA
AA sequence Show only first row Show all	>Potri.006G165500.2 pacid=42769086 polypeptide=Potri.006G165500.2.p locus=Potri.006G165500 ID=Potri.006G165500.2.v4.1 annot-version=v4.1 MGTKLEYAINLLATSHNSSSVSVRCVDDLEYLQTRGLSKDLQVSGIDKFCSSMDRMPEKHNIDFIKKTMQLHDDIFKQQWNLQVRELHRLYSVQKMLMDE LNKNEIKQDRKYWTPMTSSYTNYSQFANRPKSTEQTTCDYSFLVQRPRDDPSSRERSGSCSDETMRLTRGFDLERLAEHISTGVGAVDENQAGPSTCAPQ KGKMSIDGSDEDSEVELTLSIGGSTTSKKISKNYQTLELDSPASFISERGEDYSTPTTPMSSSSATCGQDRKRPHWLFQKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57340			unknown protein		Potri.006G165500 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.019G029500 [exp]	3.74	0.8331
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Potri.012G065100 [exp]	8.00	0.8767
AT2G47390			Prolyl oligopeptidase family p...		Potri.002G196000 [exp]	8.12	0.8545
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	9.38	0.8370	ATCSLE1.1
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	10.00	0.8475
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	10.39	0.8491
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.005G066950 [exp]	13.22	0.8245
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	15.49	0.8350
AT5G07670			RNI-like superfamily protein (...		Potri.002G143200 [exp]	15.87	0.8444
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	16.49	0.8284	DAO.3

Compare expression of checked genes

Potri.006G165500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.