Plant FIBer expression Database

Potri.006G165600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25910 301 / 2e-104 ATCNFU3, NFU3 NFU domain protein 3 (.1)
AT5G49940 241 / 1e-80 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
AT4G01940 96 / 5e-24 ATCNFU1, NFU1 NFU domain protein 1 (.1)
AT3G20970 59 / 2e-10 ATNFU2, NFU4 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
AT1G51390 59 / 3e-10 ATNFU1, NFU5 NFU domain protein 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G009300
[exp]
228 / 1e-75 AT5G49940 279 / 1e-95 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Potri.004G222600
[exp]
221 / 6e-73 AT5G49940 293 / 3e-101 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Potri.002G192200
[exp]
99 / 3e-25 AT4G01940 263 / 1e-89 NFU domain protein 1 (.1)
Potri.014G117700
[exp]
88 / 4e-21 AT4G01940 248 / 1e-83 NFU domain protein 1 (.1)
Potri.010G237400
[exp]
66 / 1e-12 AT3G20970 366 / 2e-128 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Potri.001G053700
[exp]
40 / 0.0005 AT2G33180 167 / 2e-53 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001439
[exp]
271 / 1e-92 AT4G25910 263 / 2e-89 NFU domain protein 3 (.1)
Lus10001634
[exp]
270 / 1e-90 AT4G25910 260 / 7e-87 NFU domain protein 3 (.1)
Lus10015481
[exp]
234 / 7e-78 AT5G49940 286 / 3e-98 CHLOROPLAST-LOCALIZED NIFU-LIKE PROTEIN 2, NIFU-like protein 2 (.1.2)
Lus10009999
[exp]
95 / 1e-23 AT4G01940 257 / 8e-87 NFU domain protein 1 (.1)
Lus10043440
[exp]
59 / 5e-10 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Lus10034140
[exp]
52 / 7e-08 AT3G20970 369 / 3e-131 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0232 NifU PF01106 NifU NifU-like domain
Representative CDS sequence
>Potri.006G165600.1 pacid=42768236 polypeptide=Potri.006G165600.1.p locus=Potri.006G165600 ID=Potri.006G165600.1.v4.1 annot-version=v4.1
ATGTTGAACCCTTTTCTCTCTTTAGCTCAGAAAACCCAGCAATCACTTTTGTTTAAGACCGATGCCGTTTCAGATTCCTGTGGATTATCTTCAAAGCAGA
ATGCTTTTCTCAGAGGACAGTTTCAATTTCATAGCCGACACTTTCTTCACTTCAAGTTGAACCGTGGTCGGATGAAATGTACTGGAGTTGTGGTTTCGCC
GAGTTGTGTGCTCCCATTGACTGAAGAGAATGTGGAGAAGGTTTTAGATGAGGTACGGCCTGGCTTAATGCGTGATGGAGGCAATGTGGCTTTGCATGAG
ATAGATGGTCTTGTTGTGGTTTTAAAGCTGCAAGGAGCATGTGGATCATGTCCAAGCTCAAGTATGACGTTAAAGATGGGAATTGAGACTAAGCTGCGGG
ATAAAATACCCGAAATCATGGATGTAGAGCAGATCATGGACACTGAAACTGGATTGGAGCTAAATGAGGAAAATGTCGAAAAGGCCCTTGCTGAGATTAG
ACCATACCTTGCTGGGACAGGAGGTGGAGTGCTTGAACTTGTTCAAATCAATGATTATGTTGTCAAGGTTCGGCTTAGTGGTCCTGCAGCTGGTGTTATG
ACTGTTCGTGTTGCCTTAACTCAGAAGTTGAGAGAAACGATACCTGCCATTGCAGCTGTCCAACTGATAGATTGA
AA sequence
>Potri.006G165600.1 pacid=42768236 polypeptide=Potri.006G165600.1.p locus=Potri.006G165600 ID=Potri.006G165600.1.v4.1 annot-version=v4.1
MLNPFLSLAQKTQQSLLFKTDAVSDSCGLSSKQNAFLRGQFQFHSRHFLHFKLNRGRMKCTGVVVSPSCVLPLTEENVEKVLDEVRPGLMRDGGNVALHE
IDGLVVVLKLQGACGSCPSSSMTLKMGIETKLRDKIPEIMDVEQIMDTETGLELNEENVEKALAEIRPYLAGTGGGVLELVQINDYVVKVRLSGPAAGVM
TVRVALTQKLRETIPAIAAVQLID

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25910 ATCNFU3, NFU3 NFU domain protein 3 (.1) Potri.006G165600
[exp]
0 1
AT1G67700 unknown protein Potri.010G053600
[exp]
7.61 0.9510
AT4G33520 AtHMAC6, HMA6, ... Arabidopsis thaliana heavy met... Potri.003G024000
[exp]
11.00 0.9011
AT4G37470 alpha/beta-Hydrolases superfam... Potri.007G052000
[exp]
11.61 0.9207
AT4G34190 SEP1 stress enhanced protein 1 (.1) Potri.001G301100
[exp]
14.49 0.9439 SEP1.1
AT1G49975 unknown protein Potri.001G292000
[exp]
19.79 0.9408
AT5G45930 CHLI-2, CHLI2 magnesium chelatase i2 (.1) Potri.004G053400
[exp]
20.71 0.9436 Pt-CHLI1.1
Potri.006G069900
[exp]
23.23 0.9334
AT3G12930 Lojap-related protein (.1) Potri.011G142900
[exp]
23.97 0.9402
AT1G44920 unknown protein Potri.002G114900
[exp]
33.04 0.9370
AT1G06040 CO BBX24, STO SALT TOLERANCE, B-box domain p... Potri.017G028301
[exp]
38.45 0.9204

Potri.006G165600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.