Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30190 1576 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1571 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1536 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G07560 1513 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 1511 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT3G42640 1509 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G24520 1497 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT5G62670 1443 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1430 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 1285 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090300 [exp] 1710 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G275000 [exp] 1601 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G006000 [exp] 1581 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G188600 [exp] 1511 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1507 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1505 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 1450 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1449 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1411 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001631 [exp] 1628 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10026946 [exp] 1559 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10024105 [exp] 1519 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10003259 [exp] 1433 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1433 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10026224 [exp] 1406 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10042445 [exp] 1405 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10040166 [exp] 1362 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1360 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10019593 [exp] 1283 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G165900.1 pacid=42767813 polypeptide=Potri.006G165900.1.p locus=Potri.006G165900 ID=Potri.006G165900.1.v4.1 annot-version=v4.1 ATGGCAAAGGCCTTTAGTCTCGAGGAGATCAAGAATGAGAACGTTGATCTAGAAAAGATTCCGGTTGAGGAAGTGTTTGAGCAATTGAAATGTACAAAAG AAGGTTTGACCTCGGAGGAAGGAGCCAACCGGCTTCAAATCTTTGGCCCCAACAAATTGGAAGAGAAAAAGGAAAGCAAATTTCTCAAGTTCTTGGGGTT CATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCAGCTATCATGGCTATTGCATTGGCGAATGGCGATGGAAGGCCCCCAGATTGGCAAGACTTTGTC GGTATCACCTGCTTGCTTGTGATCAACTCTACCATTAGTTTCATTGAAGAAAACAATGCGGGAAATGCTGCTGCTGCACTTATGGCTGGCCTGGCTCCTA AAACCAAGGTTCTTAGGGATGGAAAGTGGACTGAGGAGGATGCTGCAATTCTGGTTCCCGGAGACATCATTAGTGTCAAATTGGGAGATATCATTCCTGC TGATGCCCGTCTCCTTGAGGGTGATCCTTTAAAGGTTGATCAATCTGCTCTCACCGGGGAGTCACTTCCAGTAACTAAGCATCCAGGCGATGAAGTTTTC TCAGGCTCCACTTGTAAACAAGGAGAGATTGAGGCTGTTGTTATTGCTACTGGTGTTCACACCTTCTTCGGAAAGGCTGCGCATCTGGTGGACAGCACCA ACCAAGTTGGCCACTTCCAAAAGGTTCTTACTGCTATTGGGAACTTCTGTATTTGTTCCATAGCAGTTGGAATGGTTATTGAGATCATAGTCATGTACCC GATTCAGCACCGCAAGTACAGAGATGGAATTGACAATCTTTTGGTTCTCTTGATTGGAGGCATCCCCATTGCTATGCCAACGGTCTTGTCGGTGACGATG GCTATTGGATCCCACAAGCTGTCCCAACAAGGTGCCATCACTAAGCGTATGACTGCCATTGAAGAGATGGCAGGTATGGATGTACTCTGCAGTGACAAAA CTGGGACTCTAACCCTCAACAAACTGAGCATTGACAAAAACTTGATTGAGGTTTTTGCAAAGGGTGTGGACAAAGATTATGTCATCCTGCTTGCTGCCAG GGCCTCTAGAGTTGAAAATCAAGATGCCATTGATGCTGCCATGGTTGGAATGCTTGCTGATCCAAAGGAGGCAAGGGCTGGTATAAGAGAGGTGCACTTC CTTCCATTCAATCCTGTGGACAAGAGGACTGCTTTAACCTACATTGATGCTGCTGGAAACTGGCATAGAGCAAGTAAAGGTGCCCCTGAGCAGATCCTCG CCCTATGCAATTGCAGGGAAGATGTTAAGAAGAAGGTTCATTCTTGTATTGATAAGTTTGCTGAAAGAGGGCTTCGGTCATTGGCTGTTGCTAGACAGCA AGTACCTGAGAAAAGTAAGGAAAGTCCGGGTGGTCCATGGGAGTTTGTTGGCTTGTTGAACCTCTTTGATCCTCCAAGACATGACAGTGCTGAGACCATC CGTAGAGCTCTCAATCTCGGCGTAAATGTCAAGATGATTACTGGTGATCAGCTTGCTATTGCAAAGGAGACAGGACGAAGGCTTGGAATGGGAACAAACA TGTACCCTTCAGCTTCTTTACTTGGTCAGGATAAGGATGCAAGCATAGCTACTCTTCCTGTTGAAGAGTTGATTGAGAGGGCAGATGGGTTTGCTGGCGT GTTTCCAGAGCACAAATATGAAATCGTGAAGAAATTGCAAGAAAGGAAGCACATTGTCGGAATGACTGGTGATGGTGTTAATGATGCACCTGCATTGAAG AAGGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCAAGAAGTGCGTCTGACATTGTTCTAACAGAGCCTGGATTGAGTGTCATTATAAGTG CTGTGCTGACCAGTAGAGCTATTTTCCAAAGGATGAAGAACTACACTATCTATGCAGTTTCCATCACAATCCGTATTGTGTTTGGGTTCATGCTTATTGC TCTGATATGGAAATACGACTTCTCTCCTTTCATGGTTTTGATTATTGCCATCCTAAATGATGGTACAATTATGACGATCTCAAAGGATAGAGTTAAGCCA TCACCCTTACCTGATAGCTGGAAACTAAAAGAGATATTTGCCACTGGAATCGTACTTGGTGGTTACCTGGCATTGATGACTGTGATATTCTTCTGGGCAG TGCACGATACTGATTTCTTTTCGGAAAAATTTGGTGTCAGATCGTTAAGGAAAAATGATGAAGAAATGATGGGTGCTTTATACCTTCAAGTTAGTATTGT GAGCCAAGCTCTCATTTTCGTGACTCGTTCTCGCAGCTGGTCCTTTATTGAACGACCTGGTCTGCTACTGGTGTCTGCTTTCATGATTGCACAGCTGGTT GCAACTGTGATTGCCGTTTATGCCAACTGGGGTTTTGCAAGGATCAAGGGAATTGGCTGGGGTTGGGCTGGTGTCATCTGGATTTACAGTATTGTTTTCT ATTTCCCACTTGATATTATGAAGTTTGCCATCCGCTACATCCTAAGTGGAAAGGCTTGGCTCAATTTGCTAGAGAACAAGACCGCCTTTACCACGAAGAA AGATTATGGTAAAGAGGAGAGAGAAGCTCAATGGGCTCTTGCACAAAGGACCTTGCATGGGCTTCAACCACCAGAGACTGCTGGTGTCTTCAATGAAAAG AGCGGCTATAGGGAGTTGTCTGAAATCGCTGAGCAGGCTAAGAGACGAGCAGAGGTTGCAAGGCTCCGGGAGCTTCACACACTTAAGGGGCATGTTGAAT CGGTTGTTAAACTCAAGGGTTTGGATATTGATACCATCCAGCAACATTATACAGTGTAA
AA sequence Show only first row Show all	>Potri.006G165900.1 pacid=42767813 polypeptide=Potri.006G165900.1.p locus=Potri.006G165900 ID=Potri.006G165900.1.v4.1 annot-version=v4.1 MAKAFSLEEIKNENVDLEKIPVEEVFEQLKCTKEGLTSEEGANRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGDGRPPDWQDFV GITCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWTEEDAAILVPGDIISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVF SGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTM AIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSIDKNLIEVFAKGVDKDYVILLAARASRVENQDAIDAAMVGMLADPKEARAGIREVHF LPFNPVDKRTALTYIDAAGNWHRASKGAPEQILALCNCREDVKKKVHSCIDKFAERGLRSLAVARQQVPEKSKESPGGPWEFVGLLNLFDPPRHDSAETI RRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSASLLGQDKDASIATLPVEELIERADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALK KADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKYDFSPFMVLIIAILNDGTIMTISKDRVKP SPLPDSWKLKEIFATGIVLGGYLALMTVIFFWAVHDTDFFSEKFGVRSLRKNDEEMMGALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVSAFMIAQLV ATVIAVYANWGFARIKGIGWGWAGVIWIYSIVFYFPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPETAGVFNEK SGYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Potri.006G165900 [exp]	0	1
AT1G62600			Flavin-binding monooxygenase f...		Potri.013G019900 [exp]	2.44	0.9322
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.008G169400 [exp]	4.12	0.9184	PHO1.1
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	7.54	0.9332
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	12.96	0.9258
AT5G49690			UDP-Glycosyltransferase superf...		Potri.017G042800 [exp]	15.58	0.8687
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123000 [exp]	22.36	0.9135
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.007G100500 [exp]	26.15	0.9306	Pt-NHX8.1
AT1G57790			F-box family protein (.1)		Potri.012G106750 [exp]	26.45	0.9260
AT1G68820			Transmembrane Fragile-X-F-asso...		Potri.010G129932 [exp]	29.29	0.9206
AT5G17680			disease resistance protein (TI...		Potri.019G070565 [exp]	34.98	0.9141

Compare expression of checked genes

Potri.006G165900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.