Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11710 935 / 0 ATKRS-1 lysyl-tRNA synthetase 1 (.1) AT3G13490 334 / 7e-107 ATKRS-2, OVA5 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) AT3G30805 101 / 1e-24 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G26870 96 / 1e-20 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 94 / 6e-20 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G33760 70 / 3e-12 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090400 [exp] 1099 / 0 AT3G11710 946 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.018G090600 [exp] 1082 / 0 AT3G11710 937 / 0.0 lysyl-tRNA synthetase 1 (.1) Potri.003G221600 [exp] 323 / 2e-102 AT3G13490 897 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Potri.006G085400 [exp] 87 / 8e-18 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.009G084300 [exp] 69 / 4e-12 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.001G289001 [exp] 69 / 6e-12 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001625 [exp] 943 / 0 AT3G11710 900 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10001440 [exp] 941 / 0 AT3G11710 912 / 0.0 lysyl-tRNA synthetase 1 (.1) Lus10013408 [exp] 321 / 8e-102 AT3G13490 881 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10010317 [exp] 296 / 6e-92 AT3G13490 827 / 0.0 OVULE ABORTION 5, ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 2, Lysyl-tRNA synthetase, class II (.1) Lus10018862 [exp] 79 / 6e-15 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10037243 [exp] 62 / 1e-09 AT4G33760 1033 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10035657 [exp] 46 / 0.0001 AT4G33760 688 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Lus10028557 [exp] 42 / 0.0004 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N) CL0021 [poplar] [flax] OB PF01336 [poplar] [flax] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G166000.2 pacid=42767950 polypeptide=Potri.006G166000.2.p locus=Potri.006G166000 ID=Potri.006G166000.2.v4.1 annot-version=v4.1 ATGGAGGAGACCGACGCTTCTGCTCCCGGCGATAAAACCATAAGCAAAAATGCACTGAAGAAGGAATTGAAGAATAAGAAGAAAGAAGAAGAGAGACGCC AAAAAGAGGAAGAGAAAGCTAGACAGGCTGCTGCCAAGGCCAGCACCCAGGTTCAGAAATCTGCAGCGGCAGCCGATGATGAAGACATGGATCCCACGCA ATATTATGAAAATAGGCTGAAATATCTTGATGCTCAGAAGGGAGAAGGGAAAAATATGTACCCTCATAAGTTTTTTGTTACCCTGTCCATCCCTGAATAT ATTGACAAGTATGGGGGGTTAAGCAATGGAGAGCATCTTGAGGATGTCTCTGTGTCTTTGGCTGGTCGAATAATGAGTAAAAGATCTTCCTCTTCAAAGT TGTTCTTTTATGATCTGCATGGTCTTGGTGCTAAGGTCCAAGTGATGGCTGATGCAAGCAAGTCAGGTTTCGATGAAGCAGAGTTTTCTAAGCTCCATTC CAGCGTGAAGCGTGGTGATATTGTTGGTATCACTGGATTTCCAGGAAAAACCAAAAGGGGAGAGCTGAGCATCTTTCCAACATCTTTCATGGTTTTATCT CATTGTCTGCACATGATGCCCAGGCAGAAAGCTGGTCCTGGCTCGGATGCTAGTGCAAAGAAATCTGAGGTTTGGACCCCAGGATCAGTCAGGAACCCTG AAGCATATATTTTAAAAGATCAGGAAACACGTTATCGTCAACGATATCTGGATCTAATGTTGAATTCAGAGGTTCGACAAATTTTCAAGACCAGATCTAA AATCATTAAATACATACAGAACTTTCTTGACGATCTTGATTTCTTGGAGGTTGAAACACCAATGATGAATATGATTCCTGGTGGTGCTGCTGCTCGTCCA TTCAAAACTCATCATAATGATCTGAACATGAAGCTGTACATGCGCATTGCACCTGAACTCTATCTTAAAGAGTTAGTTGTTGGTGGACTTGATCGTGTTT ATGAAATTGGAAAACAATTTAGAAATGAGGGTATTGATTTGACACATAATCCTGAGTTCACAACCTGTGAGTTCTATATGGCTTATGCTGACTACAATGA CTTGATGGAACTCACTGAGAAGATGTTGAGTGGCATGGTCAAGGAACTTACAGGTGGCTACAAAATTAAATATCATGCAAATGGGCTTGACAAGGATCCA ATTGAGATTGACTTTACACCACCGTTTAGACGGATTGACATGATAGAGGAGTTGGAGAAGATGGCCAACCTCAATATACCCAAGGACCTTTCCAGTGATG AAGCTACCAAGTATCTTGTGGCTGCATGTGAGAAGTTTGAAGTCAAGTGCCCCCCTCCTCAAACGACAACTCGATTGTTAGACAAACTGGTGGGACACTT TCTGGAAGAGACTTGTGTAAACCCCTCCTTCATCATCAACCATCCTGAGATTATGAGTCCGTTGGCAAAGTGGCATAGATCGAAACCAGGCTTGACTGAA CGCTTTGAATTGTTTGTCAACAAGCATGAACTTTGCAATGCATACACTGAATTGAATGATCCTGTGGTACAACGACAACGATTTGAAGCACAACTGAAGG ATCGACAATCAGGTGATGATGAAGCAATGGCTTTGGATGAAACATTTTGTATGGCTCTTGAATATGGATTGCCACCAACTGGTGGATGGGGACTAGGCAT TGATCGGTTAGCTATGCTGTTAACTGATTCACAGAATATAAAGGAGGTGCTTCTCTTCCCAGCCATGAAGCCTCAGGATGAGCCTCCTGCTAAAGCTACT TCCGGTGTTTGA
AA sequence Show only first row Show all	>Potri.006G166000.2 pacid=42767950 polypeptide=Potri.006G166000.2.p locus=Potri.006G166000 ID=Potri.006G166000.2.v4.1 annot-version=v4.1 MEETDASAPGDKTISKNALKKELKNKKKEEERRQKEEEKARQAAAKASTQVQKSAAAADDEDMDPTQYYENRLKYLDAQKGEGKNMYPHKFFVTLSIPEY IDKYGGLSNGEHLEDVSVSLAGRIMSKRSSSSKLFFYDLHGLGAKVQVMADASKSGFDEAEFSKLHSSVKRGDIVGITGFPGKTKRGELSIFPTSFMVLS HCLHMMPRQKAGPGSDASAKKSEVWTPGSVRNPEAYILKDQETRYRQRYLDLMLNSEVRQIFKTRSKIIKYIQNFLDDLDFLEVETPMMNMIPGGAAARP FKTHHNDLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMELTEKMLSGMVKELTGGYKIKYHANGLDKDP IEIDFTPPFRRIDMIEELEKMANLNIPKDLSSDEATKYLVAACEKFEVKCPPPQTTTRLLDKLVGHFLEETCVNPSFIINHPEIMSPLAKWHRSKPGLTE RFELFVNKHELCNAYTELNDPVVQRQRFEAQLKDRQSGDDEAMALDETFCMALEYGLPPTGGWGLGIDRLAMLLTDSQNIKEVLLFPAMKPQDEPPAKAT SGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.006G166000 [exp]	0	1
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	2.44	0.9199
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076800 [exp]	3.46	0.9248
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076500 [exp]	6.92	0.9124
AT3G12860			NOP56-like pre RNA processing ...		Potri.015G092900 [exp]	7.48	0.8901	NOP56.1
AT3G09630			Ribosomal protein L4/L1 family...		Potri.006G132551 [exp]	8.48	0.8868
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Potri.006G047600 [exp]	10.72	0.9014	EIF3.4
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Potri.018G015200 [exp]	15.19	0.8488	EIF3.5
AT5G57120			unknown protein		Potri.018G140200 [exp]	16.24	0.8400
AT1G15250			Zinc-binding ribosomal protein...		Potri.006G243300 [exp]	18.33	0.8945
AT1G16740			Ribosomal protein L20 (.1)		Potri.017G119300 [exp]	21.23	0.8789

Compare expression of checked genes

Potri.006G166000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.