Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18940 1083 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 583 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 246 / 4e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 241 / 2e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74850 245 / 4e-69 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G06920 236 / 5e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 229 / 3e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 226 / 5e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 223 / 7e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 223 / 1e-62 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G297300 [exp] 583 / 0 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 580 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 255 / 3e-72 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 248 / 2e-69 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 246 / 2e-69 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.016G025600 [exp] 241 / 9e-69 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 237 / 3e-68 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G217600 [exp] 239 / 2e-67 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 241 / 8e-67 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020002 [exp] 1020 / 0 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 1010 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 962 / 0 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 942 / 0 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 566 / 0 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 565 / 0 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000035 [exp] 295 / 2e-94 AT2G18940 281 / 6e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000036 [exp] 293 / 1e-93 AT2G18940 279 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 248 / 9e-70 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10008650 [exp] 237 / 2e-66 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G166200.2 pacid=42767539 polypeptide=Potri.006G166200.2.p locus=Potri.006G166200 ID=Potri.006G166200.2.v4.1 annot-version=v4.1 ATGGAAAGCAGTCTGTTTGCAAACAAACCAGTGTATCCTATCCCAATAAACAGACCACCACCATTACCCAATAACCCACCATTAAAATTCAGCTCTGCTA CACTGCCACCTCCTCCTTCTCCTCAATCCACTTTTCATTTTGACTCTCTCCTCCAACACCTCCTCCACCTCTCTTCCCCACCCAATCACAAATTAAACAA AACCCAATTCCCTTCTCTTCAAATTTCTAATGATTCTTCTAGTCACAAACAGCTTTATAAGAACACAAGTAGAAAGCCCATTTCGACTTCAGTTTCAGTT CTTGAGTTTGAAGTTGAGAAAGAAGAGGGTTTATCTGAAAATGAGTCACTTGAATTTTTGTCGAAAAGGGGTAAGTTGCTGCTTAATTCAATAAAGGAAC AACCTTTGGGTGGTTTGAATGATTTCTTTGAGTCTTGCAAGTTTGAGTTGTTTCAAGTTGATTTGATTGGTGTCTTAAAAGCATTAGACCTTTCTGGCGA TTGTGAAAGAGCCATTTTGTTGTTTGAATGGCTGGTATTGAATCTAGGCACTGGAAATGTGAATTTAGATAATCAGGCTGTTGAATTAATGGCTAGGATT CTTGGTAGGGAGTCACAACATTCTATTGCATCAAAACTTTTTGATGTGATTCCCCTTGATGATTACTCGCTTGATGTTCGAGCATACACAACCATTCTGC ACTCATATTCGCGATGTGGCAAGTATGAGAGGGCTGTTGCTATTTTTGAGAAAATGAACGAGTCAGGCTTGTCGCCAACTTTGGTCACTTACAATGTCAT GCTTGATGTTTATGGGAAGATGGGTCGGTCTTGGAATAAGATTTTAGGTCTCTTAGATGAGATGAGAAGTAAAGGACTTGGTTTTGATGAGTTTACTTGC AGTACTGTTATATCTGCTTGTGGGAGGGAGGGCTTGTTGGATGAAGCAAAAGAGTTCTTTGTTGGATTGAAGTCTCAGGGATATGCTCCAGGGACTGTTA CTTATAATGCTCTACTGCAAGTATTTGGGAAGGCGGGGATTTATTCAGAGGCTTTGAGCATCATGAAAGAAATGGAAGATAATAATTGTCCACCTGATGC TGTGACATATAATGAGCTTGTGGCGGCTTATGTGAGAGCAGGATTCTACGAGGAAGGAGCAGCTTTAATAGACACAATGACTGAAAATGGGATTAAACCA AATGCTGTTACATATACCACCATGATAAATGCTTATGGCAGAGCAGCACAAGTGGACAAAGCTCTAAGTTTGTATGACCAGATGAAGGAGTCCGGCTGTG CTCCTAATGTGTGCACTTACAATGCTATTCTTGGGATGCTAGGGAAGAAGTCACAATCAGAGGAAATGATGAAGATACTTTGTGATATGAAAGTAGATGG ATGTGCTCCTAATCGTATAACATGGAACACAATGCTTTCCATGTGTGGTAATAAGGGTATGCACAAATACGTAAAAAGGGTTTTTCAGGAAATGAAAAGT TGTGGTTTTGAGCCTGATAGAGATACATTCAATACTTTGATTACTGCATCTGGCCGTTGTGGTTCAGATATTGACGCAGAAAAAATTTACGACGACATGC TTGAAGCAGGATTTACTCCCTCTGTTGCCACCTACAATGCTCTTCTGAATGCTTTGGCTCGACGAGGGGACTGGAGAACAGCGGAATCAGTCATCAAAGA CATGAAGAATAAGGGCTTCAAACCCAGTGAAACCTCATACTCATTAATTCTCAATTCTTATGCAAAGGGAGGGTATGTGAAAGGAATAAATAGGATTGAA AAGGATATTTATGATGGTCATATCTTTCCCAGTTGGATGCTTTTGAGAACCCTTATTCTTGCAAACTTCAAGTGTAGAGCACTAGCGGGTATGGAAAGGG CTTTTCAAGCATTGCAAAAGCATGGATACAAACCAGATTTAGTTGTCTTCAACTCAATGCTTTCTATGTTTTCCAGGAAAAACATGCATGACCGAGCCCA TGAAATAATGCATTTGATTCAAGAGTGTGGACTGCAGCCAGATCTTGTTACTTACAATAGCTTAATGGACCTGTATGCCAGAGGAGGAGAGTGCTGGAAA GCAGAAGAGATTCTGAGGGAGCTACAAAACTCTGGTGACAAATCTGACCTTATTTCTTATAACACTGTCATTAAAGGCTTTTGTAGACAAGGACTCATGC ATGAAGCCCTAAGAACTCTATCCGAGATGATATCTAGAGGAATTCGACCATGTATAGTTACATACAATACTTTTGTTGGTGGCTATGCAGCAAAGGGAAT GTTTGCAGAAATAGATGAAGTGCTTAGCTACATGACTAAGCACGATTGCAGGCCAAATGAGCTAACCTACAAAATTGTCGTGGATGGTTATTGTAAAGCA AAAAAATTCAAAGAAGCCATGGATTTTGTATCAACTATTACGGATATTGATGATTCTTTTGATTATCAGTCTATGCGAAGGCTATCTTCTCGTGTTCGGG AGAATATGCAGTCATGA
AA sequence Show only first row Show all	>Potri.006G166200.2 pacid=42767539 polypeptide=Potri.006G166200.2.p locus=Potri.006G166200 ID=Potri.006G166200.2.v4.1 annot-version=v4.1 MESSLFANKPVYPIPINRPPPLPNNPPLKFSSATLPPPPSPQSTFHFDSLLQHLLHLSSPPNHKLNKTQFPSLQISNDSSSHKQLYKNTSRKPISTSVSV LEFEVEKEEGLSENESLEFLSKRGKLLLNSIKEQPLGGLNDFFESCKFELFQVDLIGVLKALDLSGDCERAILLFEWLVLNLGTGNVNLDNQAVELMARI LGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTC STVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKP NAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKS CGFEPDRDTFNTLITASGRCGSDIDAEKIYDDMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIE KDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECWK AEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA KKFKEAMDFVSTITDIDDSFDYQSMRRLSSRVRENMQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	0	1
AT3G61320			Bestrophin-like protein (.1)		Potri.014G082900 [exp]	2.00	0.9763
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	2.00	0.9815
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	2.44	0.9745
AT3G26070			Plastid-lipid associated prote...		Potri.003G020700 [exp]	3.31	0.9653
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	4.24	0.9656
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	5.19	0.9573
AT2G44930			Plant protein of unknown funct...		Potri.012G011800 [exp]	5.47	0.9653
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	5.65	0.9627
AT5G54290		CcdA	cytochrome c biogenesis protei...		Potri.001G406700 [exp]	6.32	0.9619
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	6.92	0.9659

Compare expression of checked genes

Potri.006G166200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.