Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57360 971 / 0 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 860 / 0 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 743 / 0 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT1G51550 104 / 1e-23 Kelch repeat-containing F-box family protein (.1) AT5G58140 90 / 1e-18 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 83 / 3e-16 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT1G08420 81 / 2e-15 BSL2 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) AT2G27210 80 / 2e-15 BSL3 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) AT5G04420 76 / 3e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT2G02710 73 / 1e-13 PLPC, PLPB, PLPA, PLP PAS/LOV PROTEIN C, PAS/LOV PROTEIN A, PAS/LOV protein B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090800 [exp] 1079 / 0 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G105700 [exp] 752 / 0 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.008G135200 [exp] 751 / 0 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G252200 [exp] 126 / 6e-31 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.008G006300 [exp] 124 / 3e-30 AT1G51550 496 / 1e-173 Kelch repeat-containing F-box family protein (.1) Potri.004G209700 [exp] 93 / 2e-19 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 89 / 4e-18 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.009G170640 [exp] 83 / 2e-16 AT5G58140 825 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.009G016900 [exp] 79 / 5e-15 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015531 [exp] 1004 / 0 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 968 / 0 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 965 / 0 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019169 [exp] 739 / 0 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 718 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10020003 [exp] 702 / 0 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10013237 [exp] 694 / 0 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10030757 [exp] 691 / 0 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10034827 [exp] 107 / 2e-24 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10033377 [exp] 104 / 1e-23 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF07646 [poplar] [flax] Kelch_2 Kelch motif CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain CL0183 [poplar] [flax] PAS_Fold PF13426 [poplar] [flax] PAS_9 PAS domain
Representative CDS sequence Show only first row Show all	>Potri.006G166300.1 pacid=42770387 polypeptide=Potri.006G166300.1.p locus=Potri.006G166300 ID=Potri.006G166300.1.v4.1 annot-version=v4.1 ATGGAGTGGGATAGCAATTCGGATCTGAGTGGAGATGAAGATGAGGAGGGATTCATGTTAAATGATGGAGGAGGAGGAGGTCTTTTGCCTTTTCCTGTTG AGAATTTGCTGCAAACTGCTCCTTGTGGATTTGTTGTCACTGATGCTCTTGAACCAGACCATCCTCTTATTTATGTCAATACTGTTTTCGAGATGGCTAC TGGCTATCGAGCTGAGGAAGTTCTTGGCCGTAATTGCTGTTTCTTGCAATGTAGAGGACCATTTGCTAAGCGAAGGCATCCATTGGTTGACTCCACAGTC GTTTCAGAAATAAGAAGATGCCTTGATGAGGGCATTGAATTCCAAGGCGAGTTGTTAAACTTCAGAAAAGATGGATCTCCACTAATGAACAGGCTGCAAC TTACTCCTATATATGGAGATGATGACACAATTACTCATGTTATTGGAATCCAGTTCTTCACTGAAACTAATATTGATCTAGGTCCTGTTCCTGGTTCTTT TGTAAAGGAGTCTGCAAAATTGGCTGATAGGTTTCGTTCTGGTCTCTCCACCTATCGTCCATTCCCAGCTGGGGACCGTAATGTTTGTCGTGGCATCTGT GGGATACTGCAATTGAGTGATGAGGTACTGTATCTCAAGGTACTTTCACGGTTGACTCCAAGAGATATCGCATCAATCGGTTCTGTCTGCAGACAACTCT ATGCGCTGACGAAGAATGAGGATCTCTGGAGAATGGTCTGTCAGAATGCTTGGGGTAGTGAAACAGCTAGTGTTCTAGAGACTGTACCTGGTGCAAAGAG ACTTGGCTGGGGTCGGCTTGCAAGGGAATTGACAACTCTTGAAGCAGCTGCATGGAGAAAGCTAACTGTTGGAGGTGCTGTTGAACCCTCAAGGTGCAAT TTCAGTGCTTGTGCAGTTGGTAATCGAGTTGTCCTTTTTGGTGGGGAGGGTGTTGACATGCAGCCAATGAACGATACGTTTGTCCTGGATCTGAACTCCA GTAGCCCAGAGTGGCAACATGTCCAAGTGAGCTCCCCTCCTCCTGGTCGGTGGGGACATACACTTTCTTGTGTTAACGGGTCTCATTTGGTGGTCTTTGG AGGCTGTGGAAGACAAGGTCTATTGAATGATGTCTTTGTTTTGGATTTGGACGCCAAGCCTCCAACTTGGCGTGAGATTTCTGGATTGGCCCCTCCACTT CCACGATCATGGCACAGCTCTTGCACCCTTGATGGCACTAAGTTGATTGTCTCTGGTGGGTGTGCAGATTCTGGAGTACTTCTTAGCGACACATTTCTGC TTGATCTGTCAATGGAGAAACCTATCTGGAGGGAGATACCAGTAGCATGGACCCCACCTTCTCGGCTTGGTCACACTCTCTCAGTTTATGGTGGAAGAAA AATATTGATGTTTGGGGGTTTGGCTAAGAGTGGTCCCCTTCGTTTCCGCTCCAGCGATGTGTTTAGCATGGATCTAAGTGAGGAGGAACCTTGTTGGAGA TGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCAGGGGGAATAGCTCCTCCACCCAGGCTTGATCATGTAGCTATGAGCCTCCCGGGCGGTAGAA TCCTGATCTTTGGTGGCTCTGTTGCTGGTCTTCACTCTGCCTCACAACTTTATCTCCTCGACCCTACTGACGAGAAACCTACATGGAGGATTCTAAATGT ACCCGGGCGACCTCCTAGATTTGCATGGGGACACAGTACCTGTGTTGTCGGAGGGACAAGGGCTATAGTCCTTGGTGGCCAAACTGGGGAGGAGTGGATG CTGAGTGAGCTCCATGAACTGTCCTTGGCTAGTTCAGTTATCTGA
AA sequence Show only first row Show all	>Potri.006G166300.1 pacid=42770387 polypeptide=Potri.006G166300.1.p locus=Potri.006G166300 ID=Potri.006G166300.1.v4.1 annot-version=v4.1 MEWDSNSDLSGDEDEEGFMLNDGGGGGLLPFPVENLLQTAPCGFVVTDALEPDHPLIYVNTVFEMATGYRAEEVLGRNCCFLQCRGPFAKRRHPLVDSTV VSEIRRCLDEGIEFQGELLNFRKDGSPLMNRLQLTPIYGDDDTITHVIGIQFFTETNIDLGPVPGSFVKESAKLADRFRSGLSTYRPFPAGDRNVCRGIC GILQLSDEVLYLKVLSRLTPRDIASIGSVCRQLYALTKNEDLWRMVCQNAWGSETASVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCN FSACAVGNRVVLFGGEGVDMQPMNDTFVLDLNSSSPEWQHVQVSSPPPGRWGHTLSCVNGSHLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPL PRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFSMDLSEEEPCWR CVTGSGMPGAGNPGGIAPPPRLDHVAMSLPGGRILIFGGSVAGLHSASQLYLLDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWM LSELHELSLASSVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.006G166300 [exp]	0	1
AT5G59610			Chaperone DnaJ-domain superfam...		Potri.001G072700 [exp]	1.73	0.9549
AT5G55210			unknown protein		Potri.001G356400 [exp]	2.44	0.9488
AT4G16580			Protein phosphatase 2C family ...		Potri.005G125700 [exp]	6.32	0.9294
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Potri.018G090800 [exp]	7.93	0.9229
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.016G001400 [exp]	11.35	0.9331
AT3G60590			unknown protein		Potri.014G061000 [exp]	14.42	0.9310
AT4G19390			Uncharacterised protein family...		Potri.004G234600 [exp]	15.23	0.9190
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	16.97	0.9074
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	18.70	0.9179
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.016G113500 [exp]	18.70	0.9028	HPT3.1

Compare expression of checked genes

Potri.006G166300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.