Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18900 1030 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G26480 672 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT1G48630 54 / 2e-07 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 54 / 2e-07 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091100 [exp] 1448 / 0 AT2G18900 1036 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 44 / 0.0004 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003637 [exp] 995 / 0 AT2G18900 921 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10036290 [exp] 479 / 2e-158 AT2G18900 439 / 2e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 47 / 3e-05 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 45 / 0.0002 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017570 [exp] 43 / 0.0006 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G166500.1 pacid=42767307 polypeptide=Potri.006G166500.1.p locus=Potri.006G166500 ID=Potri.006G166500.1.v4.1 annot-version=v4.1 ATGATTAGAGGCGGTAGAAGCTACGTGTTGTCACCACCAGCCTTCTCCAACGACGCCAAACGACTCCTCGTTTGCACTGCCAACTCCGTCACCATCTTCA GCACCGCCACCGGCTTACCGGTATTGTCGCTTGACGGCCATACGGCGCTTGTTACGGCGGTGATAGTAGTGCCGGCGTCAACTCCAGCAAGTAAGATACT ATGCTATTGTTGGACGGCGTCACTTGACGGAACTATTCGTTATTGGGATTTTTCAGTGCCAGAGTTAATTAAGATAATTAATGTTAATTTGCCGATTATC TCCATGGTCATTCCATCTTTATTAAGTCAGACAGCTGAGACCAATGACAAATCTCCTAAAACTTTTGCTTATTTGTCTGTCGAAAACACCAAAGAACCAG AAAAGGAGTCTGGCAAGGCCTTGCGTGGTCAAATTAAAAAGTGTAACTTAACAAATTCTCGTATGGCTGGTGGAATGACATTGTCAGAGACGAAGCAACC AGAGATTATAACTGTTAGCTCCTCGGGAAAATATTTTGGTATCCAATTTAAGCGCAAGCTTCGAATATGGAAAGTTCCGACTGCAGAGTCTGAACGTGCT GTGGTTAAGAAGATCACGCTGCATCATACAAAGAATATGAATGTTCTTGCATTCCACCCGACTCAGAGAATTGTTGCTGCAGGGGATGTGACGGGAAGAA TTTTGATTTGGAGGGGATTTGGGGATAGAACATTTGCTGATGGTGATGGATTAGTGAGTAGAAAGTTGACGAATAACGAGGAAGAAAGACCTGGAGTGAG GGGCGATGATGACGCTGATTCATGCACCACATGGCATTGGCATTCTGCTGAAGTAAATGTTCTGTTTTTCTCTTCTGATGGAGCTTATTTGTATTCAGGT GGAAAGGAAGGAGTTCTTGTGGTTTGGCAACTAGACACAGGAAGGAAGAAATTTTTACCACGAATTGGATCTCCACTCTTATGGTTTACAGATTCTCCAG ATCCTTCACTTTCCTCTATATCTTGTGCAGATAATCAAATTCATCTACTCAAAATGCCTTCGATGGAAATTCTGAAATCCATCTCAGGGATCAAGCTTCC TTGCTCATTTCCAGAGATGTGCAATGGCTTACAAAGTGGGATTGCCTTTGACTGTAATGCGGGATTAGTTGCTTTGCGTACAGAAAACTATTGCATCCAA TTATACAGCCTATTTGATGACCGAGGAATTTCTGAGGTTGTAGTTTGTGAGAGAAACCATCAACCAGGCGATGAAGTCACGGTAGTAGTGACATTAGCTG TTCTCTCCTTAGATGGCTCAATGATGAGCACTGCTGAAGTGAAGCTTCCTGAGGAGGGTTTGGGAGGATTAGTTTGTCTTAAGTTTTGGGCACTGGGATC ACAAAACAAGGAGTTCAGTTTGTCTACCATTGTTTATGAGCCCCACAGGGATGCAGGCATTTCAGCTATTGCTTTTCATCCTACCCGCCCTATGGCTGTC AGTTCTTCTTATGGTGGGGACTTCAAGGTTTGGGTTTGCAACAATGGGATTCAGGAGATGGATAAACCGCTCCCAAATTCTGGATGGACTTGCCATGCTG TTGGCTCATATAAAAAAAAACCAATGACAGCTGCCACATTTTCTTCCGATGGTTCTGTTCTTGCTGTTGCAGCTGAAACTGTTATCACACTGTGGGATGC AGACAAGAATATTCTAGTGGCTGTGATTGGGGAGACTCTGATGCCTGTTGTGAACCTCGCATTTGCTGGAAAGTCAGAGTATCTTGTTTCTGCGTCTTGG GGTTCAAAACCACAGCTATCCATTTGGAGTATGTCAAAGCTGTCTGTATCTTGGTCATACATGCTTCATGTGGAAGCTATTGCTAGCGCAGCAGACATGT CATTCTTTGCTGCTCTTGCACTTCTTCCTGAATCATCTAAATGGAATGAAACATCATTAAAAGGAAGAGATGGTGTAATCTTATTATTCAATGCATCTGA TCCTGTTCCTATTTTTACCTGGTCAGTGCAAAAGGCCAAGGGAGGGGCTCTTGCCTTTATTCAAGCAAATCAGTTTGCTATAGATGAAAATGAACTAGAT GGGAAACCACATCAGTCATTGCTTGCATATGTAAATGGTGATCATGAGTATTTACTATTTGACCCGCAAGGTAAAGAAGCAAAGGAACATAGCACAATTC GGCAAGAGGGTCTCGGTGACCTTGAAGAAGCAGGGAAATTTGGGTATGCGTCTATCTATGGGGAGCTCCCACAGTTTGACCCAAAGAGGAAACAGGCGTC ATGGGTCCCATCTGCATCATTGGAGAGGCCTTGGGAGACCGTATTTAGTGGATCATCACATAATCTTCCACCCCTAACTAAATTATGTTCAGTATTTTTG GAGTCTTTGTTGGAAAAGAGGACTGTCAATGTTGATTGA
AA sequence Show only first row Show all	>Potri.006G166500.1 pacid=42767307 polypeptide=Potri.006G166500.1.p locus=Potri.006G166500 ID=Potri.006G166500.1.v4.1 annot-version=v4.1 MIRGGRSYVLSPPAFSNDAKRLLVCTANSVTIFSTATGLPVLSLDGHTALVTAVIVVPASTPASKILCYCWTASLDGTIRYWDFSVPELIKIINVNLPII SMVIPSLLSQTAETNDKSPKTFAYLSVENTKEPEKESGKALRGQIKKCNLTNSRMAGGMTLSETKQPEIITVSSSGKYFGIQFKRKLRIWKVPTAESERA VVKKITLHHTKNMNVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFADGDGLVSRKLTNNEEERPGVRGDDDADSCTTWHWHSAEVNVLFFSSDGAYLYSG GKEGVLVVWQLDTGRKKFLPRIGSPLLWFTDSPDPSLSSISCADNQIHLLKMPSMEILKSISGIKLPCSFPEMCNGLQSGIAFDCNAGLVALRTENYCIQ LYSLFDDRGISEVVVCERNHQPGDEVTVVVTLAVLSLDGSMMSTAEVKLPEEGLGGLVCLKFWALGSQNKEFSLSTIVYEPHRDAGISAIAFHPTRPMAV SSSYGGDFKVWVCNNGIQEMDKPLPNSGWTCHAVGSYKKKPMTAATFSSDGSVLAVAAETVITLWDADKNILVAVIGETLMPVVNLAFAGKSEYLVSASW GSKPQLSIWSMSKLSVSWSYMLHVEAIASAADMSFFAALALLPESSKWNETSLKGRDGVILLFNASDPVPIFTWSVQKAKGGALAFIQANQFAIDENELD GKPHQSLLAYVNGDHEYLLFDPQGKEAKEHSTIRQEGLGDLEEAGKFGYASIYGELPQFDPKRKQASWVPSASLERPWETVFSGSSHNLPPLTKLCSVFL ESLLEKRTVNVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	0	1
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	2.64	0.8531	PURE.1
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	2.82	0.8671
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	6.16	0.8652
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	6.92	0.8540
AT1G13040			Pentatricopeptide repeat (PPR-...		Potri.008G185000 [exp]	7.74	0.8587
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	10.00	0.8596
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	10.95	0.8607
AT5G05450			P-loop containing nucleoside t...		Potri.008G073100 [exp]	12.84	0.7671
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	16.73	0.8525
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	17.23	0.8489

Compare expression of checked genes

Potri.006G166500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.