Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18890 462 / 4e-163 Protein kinase superfamily protein (.1.2) AT5G57670 351 / 8e-117 Protein kinase superfamily protein (.2) AT5G65530 343 / 2e-115 Protein kinase superfamily protein (.1) AT5G18910 338 / 1e-112 Protein kinase superfamily protein (.1) AT3G05140 333 / 4e-111 RBK2 ROP binding protein kinases 2 (.1) AT5G10520 330 / 7e-110 RBK1 ROP binding protein kinases 1 (.1) AT5G35960 318 / 1e-105 Protein kinase family protein (.1) AT4G35030 242 / 1e-76 Protein kinase superfamily protein (.1.2.3) AT1G26150 248 / 3e-75 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G21590 245 / 3e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091200 [exp] 583 / 0 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 390 / 1e-131 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 384 / 3e-129 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.013G028100 [exp] 332 / 1e-110 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 331 / 3e-109 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 324 / 2e-108 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.007G011700 [exp] 321 / 2e-106 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.005G067000 [exp] 271 / 2e-84 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 270 / 7e-84 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006957 [exp] 457 / 9e-162 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10019990 [exp] 379 / 4e-127 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10008192 [exp] 330 / 6e-110 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10012776 [exp] 330 / 7e-108 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 331 / 1e-107 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10035949 [exp] 320 / 1e-105 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 314 / 2e-103 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10012727 [exp] 296 / 3e-95 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10015516 [exp] 294 / 2e-94 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2) Lus10025713 [exp] 266 / 1e-85 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G166600.1 pacid=42768543 polypeptide=Potri.006G166600.1.p locus=Potri.006G166600 ID=Potri.006G166600.1.v4.1 annot-version=v4.1 ATGAAGTACATAAGAGCCAACAGCTTGAAAAGGCTTTTCTCATTGAAAAGAAGCAGTCTTCAAGATATAGTTTTCACCAATGAAGAAGAAAAAAACAATG AAAACTCCAAGGTTGTTCAAGAGCAAGAACATTCTCCAAGGCCCTCTTGGAAATGCTTCTCTTTTGAAGAAATATTCGATGCCACCAATGGCTTTAGACC AGAAAATTTGGTGGGGAAAGGAGGGTATGCAGAGGTATACAAAGGAGTGTTACGTGATGGAGAGGAGATTGCAATTAAGAGGCTAACAAAAGCTTGTAGG GATGAGAGGAAAGAGAAGGAGTTCTTGTCAGAGATTGGGACAATTGGTCATGTCTGCCATGCTAATGTGATGTCCTTGTTGGGTTGTTGCACTGACAATG GGCTTTATCTCATCTTTCATTTCTCCTCCAGAGGCTCTGTTTCTTCCCTTCTTCATGATGAGAATTTTCCAGTGTTAGATTGGAAAATAAGGTACAAGAT TGCCATTGGAACTGCTAGAGGGCTCCATTACTTGCACAAGGGGTGTCAAAGAAGGATAATTCACCGAGACATTAAATCTTCAAATATTCTTCTGACAGCT GACTTTGAACCATTGATATCCGATTTTGGATTGGCAAAATGGCTTCCATCTGAATGGACTCACCATTCAATCGCTCCGATTGAAGGAACCTTTGGGCACT TGGCACCTGAGTACTACATGCATGGAATAGTGGATGAAAAAACAGATGTGTTTGCATTTGGAGTCTTCCTACTGGAGATCATTTCTGGCAGGAAACCAGT TGATGGTTCTCACCAAAGCATTCATAACTGGGCTAAACCAATATTGAGCAGAGGAGAGATTGAAAAGCTGGTGGATCCAAGGCTTGGAGGGATCTATGAT GTTACACAGCTGAAAAGACTTGGCTTTGCCGCATCCCTTTGCATCCGGGCATCTTCAACATGGCGCCCTACCATGAGTGAGGTACTGGAAGTAATGCTAG GAGAGGAGGAGATGGATGAAGAAAGGTGGAAGACGCCCAAGGAAGAAGAGCATGAAGAATTCTGGGGTTTTGAAGATCTAGAATATGAATGTCACAGTTC CTTCTCAATTTCTCCACAAGATTCAATCTCTACAAGAAGTACTACGACCATTATACATTAG
AA sequence Show only first row Show all	>Potri.006G166600.1 pacid=42768543 polypeptide=Potri.006G166600.1.p locus=Potri.006G166600 ID=Potri.006G166600.1.v4.1 annot-version=v4.1 MKYIRANSLKRLFSLKRSSLQDIVFTNEEEKNNENSKVVQEQEHSPRPSWKCFSFEEIFDATNGFRPENLVGKGGYAEVYKGVLRDGEEIAIKRLTKACR DERKEKEFLSEIGTIGHVCHANVMSLLGCCTDNGLYLIFHFSSRGSVSSLLHDENFPVLDWKIRYKIAIGTARGLHYLHKGCQRRIIHRDIKSSNILLTA DFEPLISDFGLAKWLPSEWTHHSIAPIEGTFGHLAPEYYMHGIVDEKTDVFAFGVFLLEIISGRKPVDGSHQSIHNWAKPILSRGEIEKLVDPRLGGIYD VTQLKRLGFAASLCIRASSTWRPTMSEVLEVMLGEEEMDEERWKTPKEEEHEEFWGFEDLEYECHSSFSISPQDSISTRSTTTIIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18890			Protein kinase superfamily pro...		Potri.006G166600 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Potri.015G049100 [exp]	7.14	0.8447
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	9.79	0.8948
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	13.34	0.8746
AT3G03000			EF hand calcium-binding protei...		Potri.001G138000 [exp]	13.85	0.8692
AT1G05170			Galactosyltransferase family p...		Potri.014G153700 [exp]	15.36	0.8713
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G237700 [exp]	19.05	0.8715
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Potri.004G141000 [exp]	23.47	0.8417	HOMOLOG.1
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	23.66	0.8701
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	25.51	0.8660
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.001G320800 [exp]	31.74	0.8624	PtrFLA14-8,FLA14.8

Compare expression of checked genes

Potri.006G166600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.