Plant FIBer expression Database

Potri.006G167600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02920 219 / 7e-71 ATRPA32B Replication protein A, subunit RPA32 (.1.2)
AT2G24490 175 / 2e-53 ATRPA32A, RPA2, ATRPA2, ROR1 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
AT1G07130 46 / 3e-06 STN1, ATSTN1 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G091700
[exp]
427 / 5e-153 AT3G02920 246 / 3e-81 Replication protein A, subunit RPA32 (.1.2)
Potri.006G275700
[exp]
189 / 7e-59 AT2G24490 251 / 3e-83 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Potri.006G272000
[exp]
55 / 4e-10 AT2G24490 73 / 4e-17 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Potri.005G212900
[exp]
44 / 2e-05 AT1G07130 182 / 1e-59 Nucleic acid-binding, OB-fold-like protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019976
[exp]
278 / 1e-93 AT3G02920 258 / 8e-86 Replication protein A, subunit RPA32 (.1.2)
Lus10015505
[exp]
229 / 2e-73 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2)
Lus10026954
[exp]
179 / 3e-55 AT2G24490 252 / 7e-84 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Lus10020154
[exp]
163 / 4e-49 AT2G24490 243 / 3e-80 SUPPRESSOR OF ROS1, replicon protein A2 (.1.2)
Lus10026953
[exp]
102 / 1e-24 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2)
Lus10042621
[exp]
41 / 0.0004 AT1G07130 169 / 2e-54 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF01336 tRNA_anti-codon OB-fold nucleic acid binding domain
CL0123 HTH PF08784 RPA_C Replication protein A C terminal
Representative CDS sequence
>Potri.006G167600.1 pacid=42769629 polypeptide=Potri.006G167600.1.p locus=Potri.006G167600 ID=Potri.006G167600.1.v4.1 annot-version=v4.1
ATGCACGGAGGCAGCGAATTCGATGGAAGCGCAGCAGCCTTCATGGGCGGCGGATTCATGCCTACTCAATCCGCTCTGCCTTCTTCTTCTGATTCCTCCT
CCTTCTCCATCTCCAAAAATCGGGAGGCGCGGTGCTTGTTTCCGCTGACTGTGAAGCAGATAAACAACCTAACAAGCAATGATGAATCTAATCTCATCAT
TGATGGTGCTGAAGTTAACAATGTTACAATTGTGGGGAGGGTATCCCACAAGGAAGACAAGGCCAGCGAGTACTCATTTTTAATTGATGATGGGACTGGA
CAGATTGAATGTACCCAATGGGTTCAAGAAAGCTTAGATACAGAACAAATGGGGGAAATCTTAGTTGGCATGTATGTTCGTGTTCATGGACACTTAAGAG
GGCTGCAAGGCAGAAGGTTCTTAAATGTCTTCTCCATTAGGCCTGTTACAGACTTTAATGAGGTTCCAAACCACTTCATTGAGTGCATATATGTCCACTT
CTACAATACCAGGATACGGGGTGTCACTGCTCAGCCCCCAGTGGCAAATTCAACAAATACTTCTTTAAAGGGATACCAAGCTGCCCCGCCATATCAATCT
TCTGCCTATTCCAGTGCCGATGGACTGAACAATGCTAGTCAGATGATATTAAATTTTTTGCAGCAACCTTCGTATCTCACCACCGAGGGAGCTCACTATG
ATGCCATTGCCGGTCAGCTAAACATTCCAACGGATAAGCTCAAGGAAGTACTACAGGTGCTTGTTGACAATGGCCTCGTTTACACAACTATCAATGACGA
TTACTATAAGTCCACAGTTAATGCTTGA
AA sequence
>Potri.006G167600.1 pacid=42769629 polypeptide=Potri.006G167600.1.p locus=Potri.006G167600 ID=Potri.006G167600.1.v4.1 annot-version=v4.1
MHGGSEFDGSAAAFMGGGFMPTQSALPSSSDSSSFSISKNREARCLFPLTVKQINNLTSNDESNLIIDGAEVNNVTIVGRVSHKEDKASEYSFLIDDGTG
QIECTQWVQESLDTEQMGEILVGMYVRVHGHLRGLQGRRFLNVFSIRPVTDFNEVPNHFIECIYVHFYNTRIRGVTAQPPVANSTNTSLKGYQAAPPYQS
SAYSSADGLNNASQMILNFLQQPSYLTTEGAHYDAIAGQLNIPTDKLKEVLQVLVDNGLVYTTINDDYYKSTVNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02920 ATRPA32B Replication protein A, subunit... Potri.006G167600
[exp]
0 1
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Potri.014G021100
[exp]
2.44 0.9298 CYCA3.2
AT5G06590 unknown protein Potri.016G064200
[exp]
7.07 0.9176
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Potri.003G104700
[exp]
10.81 0.9041
AT2G37960 unknown protein Potri.006G094600
[exp]
11.22 0.9077
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Potri.004G131600
[exp]
12.16 0.9110
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Potri.016G070800
[exp]
15.49 0.8972
AT1G21880 LYM1 lysm domain GPI-anchored prote... Potri.002G084800
[exp]
16.43 0.9032
AT2G32590 EMB2795 EMBRYO DEFECTIVE 2795, unknown... Potri.014G155900
[exp]
18.41 0.9163
AT1G54385 ARM repeat superfamily protein... Potri.019G033900
[exp]
19.89 0.9025
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.005G142200
[exp]
20.97 0.9080

Potri.006G167600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.