Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30200 627 / 0 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT5G57380 353 / 2e-112 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 285 / 2e-87 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT3G24440 238 / 5e-69 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18870 92 / 9e-21 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 54 / 5e-07 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 48 / 2e-05 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 47 / 3e-05 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT1G14740 44 / 0.0004 Protein of unknown function (DUF1423) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G091500 [exp] 1294 / 0 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G076500 [exp] 401 / 1e-129 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.002G111600 [exp] 309 / 2e-96 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.006G158676 [exp] 302 / 6e-92 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.009G059000 [exp] 48 / 3e-05 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.001G264100 [exp] 46 / 9e-05 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 45 / 0.0002 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 45 / 0.0002 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038260 [exp] 758 / 0 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10025841 [exp] 613 / 0 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019393 [exp] 273 / 8e-83 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 271 / 8e-83 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 268 / 4e-80 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 263 / 2e-79 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 243 / 1e-70 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 181 / 1e-50 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10040339 [exp] 55 / 6e-09 AT4G30200 49 / 9e-08 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019718 [exp] 53 / 1e-06 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Potri.006G167800.6 pacid=42766887 polypeptide=Potri.006G167800.6.p locus=Potri.006G167800 ID=Potri.006G167800.6.v4.1 annot-version=v4.1 ATGGATTTGCCTTTTGAGGGAGGTGCTCTTGATCCGTCAAAATGCAGTAAGTTAAGTATGAATGAAAAGAGAGAACTTGTCTATCAATTATCGAAGTGGC CAGGTGCATCTGAAAGACTACAGTCATGGAGCCGTCAGGAGATTCTGCAGATCCTATGTGCAGAGATGGGAAAAGAAAGAAAATATACAGGCTTGACGAA GTTGAAAATCATAGAGCACCTTTTAAAACTTGTATCTGAAAAAAAATCTGGGGAATGTGAGGCCTCACCTGATCTCGAGACCAAAATATCTGCTGCATCC ATTCAGGGAGCTTCCAAAAGGCAGAGGAAAACTGATAACCCCTCTCGGGTACCTGTTTCATTGAGCTGTGTTGCAACCAACAATGGGATCAGTGATCAAG GCAATACTGTATACTGCAAAAACTCGGCATGTAGAGCTACCTTAAGACCAGCTGACACATTTTGCAAGAGGTGTTCATGTTGTATCTGTCGTCAGTACGA TGACAACAAAGATCCCAGCCTGTGGTTAATTTGCAGCTCAGAGCCTCCTTTTCAAGGTGTTGCCTGTAGCATGTCATGCCATCTTGATTGTGCCTTAAAA CAGGAAAGTTCTGGAATAGGGAAAAATGGACGTCATGGTAGACTTGATGGGAGCTTTTGCTGTTTTTCTTGTGGGAAAGTTAACGATTTGCTAGGATGCT GGAGAAAACAATTGATGATGGCTAAAGATACCAGGAGGGTAGACATTCTGTGCTATCGTGTATCCTTAAGCCAGAAACTTCTGAATGGGACTGAAAAGTA TCAGAAGCTTCTTGAGATTGTTGGTGAAGCTGCAACGAAACTTGAGGCTGAAGTGGGTCCTTTAATTGGTTTACCTGTAAAGATGGGTAGAGGTATTGTT AACAGGCTTTCTTCAGGATCAGAGGTTCAGAAACTCTGCACTTTTGCTTTGGAGTCACTGGACAAAATGCTTTCAAACACCATTTCACATCCATTGCCTG ATCCGAAGATGCAAGATTCAAACATGATTGCTCCAATCACAGTTAACTTTGAAGATGTACATTCGACTTCCCTTGCCTTGGTTTTGGGTTATGAAGATTC TTCAGCTGATGATATTGTTGGTTATACTTTGTGGCATCGTAAAGGTCATGATCTGGATTATCCAGCAGAACCTACTTGCAGACTGTTCTTGCCAAATACA AGATATGTTGTCGCAGGTCTATCTCCAGCCACAGAGTATCATTTTAAAGTTGTTCCGTTCAATGGTGTAAGAGAATTGGGTACGTGTGAAGTTCAGTGCT CAACCGGAATGACTCAGGAAGAAGTCCTAAACTATTCAATAGTAGAAAGAAGTCAAAGCCCAAATACCAATTGTAGCAGCCTCTCTAATCCGTCTTCTGT AGAGGATGAAACAAATAACAATCCACCATGCAATGATCAGATTGTCAATCGAGCAGACAATTATCGTACTTGTTTGAAGGACAGTGATAAAATTGTTTCT GCCAACAAGTCCAATGGTGCTTTAAATTTCTCTGGCACCCTTGCAGATGCAATTCCCTTGCTAGATGAGGAACATGCCACACAGGTGGTAAGCTCCAAGC TCAATTCTGATATGCAAATGCTTGATAAGAAGCGCTTGACAGAGGGTCAAATCATTGAGTTAATTACCGATAATGGGTCAGATGCCCCTGTCCAGACTGC CATGGAATGCATGCCATTTGTGAGCAACTCTGAAGCTAGCTTGCCCATTACTCCCTGCAAACTGGAAATGCACAAGGATGGGCAAGGAAGAAATGGAAGA TTTAAATCCAGTGACAAAGACATAGTAAATGGGTCTGGAAAAGGGGAGGAGCCCCAAGATGGCAGCACTTCAAAGAAGAGAAGTGGGGAAAGGCGAGACG AGGAGTGCATGGCAAATGGTAATTCAGATAGGGACTTTGAGTATTACGTGAAGATAATCAGATGGTTAGAGTGTGAGGGGCATATCGAGAAGAATTTCCG GCAGAAATTCTTGACTTGGTATGGCTTGAGGGCAACAGAGCAAGAGGTAAGGGTTGTGAAGACATTCGTTGATACCTTTATTGAAGATCCTGCTTCTCTA GCAGAACAAATCGTGGACACCTTTTCGGAATGTATTTCCAGCAGGAGATCATCAGTTGTGCCATCTGGGTTCTGCATGAAGCTCTGGCATTGA
AA sequence Show only first row Show all	>Potri.006G167800.6 pacid=42766887 polypeptide=Potri.006G167800.6.p locus=Potri.006G167800 ID=Potri.006G167800.6.v4.1 annot-version=v4.1 MDLPFEGGALDPSKCSKLSMNEKRELVYQLSKWPGASERLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLKLVSEKKSGECEASPDLETKISAAS IQGASKRQRKTDNPSRVPVSLSCVATNNGISDQGNTVYCKNSACRATLRPADTFCKRCSCCICRQYDDNKDPSLWLICSSEPPFQGVACSMSCHLDCALK QESSGIGKNGRHGRLDGSFCCFSCGKVNDLLGCWRKQLMMAKDTRRVDILCYRVSLSQKLLNGTEKYQKLLEIVGEAATKLEAEVGPLIGLPVKMGRGIV NRLSSGSEVQKLCTFALESLDKMLSNTISHPLPDPKMQDSNMIAPITVNFEDVHSTSLALVLGYEDSSADDIVGYTLWHRKGHDLDYPAEPTCRLFLPNT RYVVAGLSPATEYHFKVVPFNGVRELGTCEVQCSTGMTQEEVLNYSIVERSQSPNTNCSSLSNPSSVEDETNNNPPCNDQIVNRADNYRTCLKDSDKIVS ANKSNGALNFSGTLADAIPLLDEEHATQVVSSKLNSDMQMLDKKRLTEGQIIELITDNGSDAPVQTAMECMPFVSNSEASLPITPCKLEMHKDGQGRNGR FKSSDKDIVNGSGKGEEPQDGSTSKKRSGERRDEECMANGNSDRDFEYYVKIIRWLECEGHIEKNFRQKFLTWYGLRATEQEVRVVKTFVDTFIEDPASL AEQIVDTFSECISSRRSSVVPSGFCMKLWH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Potri.006G167800 [exp]	0	1
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	3.46	0.7774
AT4G12070			unknown protein		Potri.003G207600 [exp]	6.48	0.7899
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.010G150000 [exp]	18.22	0.7824
					Potri.013G133550 [exp]	19.79	0.7529
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	24.73	0.7721
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	27.92	0.7314
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.016G091100 [exp]	37.74	0.6912	PAL1.3,PAL4
AT3G57120			Protein kinase superfamily pro...		Potri.008G037401 [exp]	43.04	0.7291
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	48.33	0.7300
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.018G013500 [exp]	48.53	0.7147

Compare expression of checked genes

Potri.006G167800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.