Plant FIBer expression Database

Potri.006G168200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57460 861 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007798
[exp]
920 / 0 AT5G57460 890 / 0.0 unknown protein
Lus10007487
[exp]
895 / 0 AT5G57460 885 / 0.0 unknown protein
Lus10004736
[exp]
562 / 0 AT5G57460 538 / 0.0 unknown protein
Lus10028963
[exp]
424 / 2e-143 AT5G57460 517 / 5e-180 unknown protein
Lus10000167
[exp]
377 / 1e-127 AT5G57460 358 / 3e-121 unknown protein
Lus10004737
[exp]
183 / 9e-55 AT5G57460 182 / 2e-55 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0448 Cargo_bd_muHD PF10291 muHD Muniscin C-terminal mu homology domain
Representative CDS sequence
>Potri.006G168200.1 pacid=42766973 polypeptide=Potri.006G168200.1.p locus=Potri.006G168200 ID=Potri.006G168200.1.v4.1 annot-version=v4.1
ATGTCCTGTTTAGCCCTTTCTTTGCAACCCTCAAATGGATCCGATATCCTCCTCCAAACCCGTGAGTGGTTCCCACCCGCTCGCGCACTCATCGCCACCT
CCGCCTTCCGCCAAACACGCCTAGCCTTCTCCGCCACCAAACACCAACCAACCGCCACCACCAACCCTAGCAACCTTTCTTCCGACGATTACTCCCTCTC
TGCAGCCTCTGTCGACTCCATTGCCTCTCTCGGTGACGATCCCCTCGCCGCCTCCAGCGGCCAGCTGATTGTCGGTGTTGAGAGCCGTTACCGTGTAGTC
TACCGTCTAGTCAATGGAATCTACATTCTAGGTGTTACAATTGCAGATGGCGACAACTCAGTTAATGTGTTTGAGTGCATCAACATTGTTAATCAAGCTG
TTAGTGTCATTGTAACTGCTTGTCGTGGCGTAGATGTGACTCCAGAGAAGCTCAGCCGGAAATACGCAGAGATCTATATGGCATTGGATATTGTACTACG
AGGTGTGAGCAATATCAGACTTGCAGCTATGTTAACTTCAATGCATGGAGATGGCATTGCAAAAATGGTGCATTCTGCTTTGGATACGGAGAACAAAATA
CGCGGAGCAGATAGTTGGTCTAATCTGGAAGTGCAGGCATCTGAGCAGCAGGCTAGCATTGAGGCATTTTCGAATGCAAGTTTTGAGTTGCCTCCGGAGA
CTATTGCCGCTGGAGATGAGGTGGCAGCGAGTCTTGCACCTGTTGTAAGTGAGCAGGATCAAAAATTGGAAAAACTTGAGGAACCTGAGGGGCCTAAAGA
TCCGTTTGCTGCGAGTGAGGCAGTAAATAAGCCAGAGGAGTTGGCTGGTGAATTTAAAAAGGATAAGACTCAGTCTAAGGATTTGACTCTTGCATTGGCA
GGGTTGGAGGTTACTACATTGCCCCCTGCAGAGGCGACGCAAGCAACACATATAAGCGTGGAGGGATTTGAAGGGGACTATGGTGGGATCGAGTTTAGTA
ATGAACAGGCTTCTTTGGGAGAAACATTTGAAGGTTTCGGAGATGCATGGGGAGGTGGATTGGATGCTTCAGAGTTTGTGGGGCCGAAGAAAATCCCCAA
ACAACAAGGTCTCGGTGGACTTGAATTGTTGCAAACTGGTGATAGTGGCGATGCAGCAGCAGCAGCAGCAGCAAAAGCAAAGGCTGCGAGTGGAGCTACA
GGTACTCCTCTTGAGAATCTTTTGGTTCAGAAAACTGAAATGAAGGGTCCTGAGATGTATATTGTAGAGGAAATTAGTGCAGAGTTTAGGGAATCATTGC
TTGCAAGAGTTGGATTAATGGGCCTGGTTTATTTGAGAACATTGCCCCCTAAAACTGCTGCTGATAAAGAAACTGAGTTTTCATTTCAAGTTGATAATAC
AAGTGCTGTCAAGAGATTTGTTATGCAGGGTTCAAAGGTTAGTAGCCTAGGTAATGGGATGTTTCATGTGAGGACTGCACCCTCTGATGAGCCTATACCA
ATATTGAAGTATAGTTTGCTGCCTAGGTTAACTCCATTGCCGTTAAGGGTTCGTCTTACACAGCGCCATAGTGGAACTTTACTATCCTTGATGATCCAGT
ATGTTTCAAATCCAGATCTTCCAGCACCACTCACTGATGTGACATTTATTTTGAAATTACCAGTAGACCCTACATTGTTGAAGGTTTCGCCTAAAGCTGT
GTTAAATAGGCCAGAGAGAGAGTTGAAATGGCATGTGCCAGAGATTCCACTCAAGGGTTCTCCTGGTCGATTGAAGGCAAGAATGCCTGTTGATTCTAAC
GAGGGAGAGGTTGATGAAGAGATTGAGGTTTTTGGTTACGCTAAGTTTTCGATGCAAGGAAAGACTTCTTTATCTGGCATTTGTCTACGGCCTGCTTCAG
AGGGTAAGACAGACTTTTATGAGGTTAGTCACAGATACGAAAGTGGGGTTTACATGTGCAATTGA
AA sequence
>Potri.006G168200.1 pacid=42766973 polypeptide=Potri.006G168200.1.p locus=Potri.006G168200 ID=Potri.006G168200.1.v4.1 annot-version=v4.1
MSCLALSLQPSNGSDILLQTREWFPPARALIATSAFRQTRLAFSATKHQPTATTNPSNLSSDDYSLSAASVDSIASLGDDPLAASSGQLIVGVESRYRVV
YRLVNGIYILGVTIADGDNSVNVFECINIVNQAVSVIVTACRGVDVTPEKLSRKYAEIYMALDIVLRGVSNIRLAAMLTSMHGDGIAKMVHSALDTENKI
RGADSWSNLEVQASEQQASIEAFSNASFELPPETIAAGDEVAASLAPVVSEQDQKLEKLEEPEGPKDPFAASEAVNKPEELAGEFKKDKTQSKDLTLALA
GLEVTTLPPAEATQATHISVEGFEGDYGGIEFSNEQASLGETFEGFGDAWGGGLDASEFVGPKKIPKQQGLGGLELLQTGDSGDAAAAAAAKAKAASGAT
GTPLENLLVQKTEMKGPEMYIVEEISAEFRESLLARVGLMGLVYLRTLPPKTAADKETEFSFQVDNTSAVKRFVMQGSKVSSLGNGMFHVRTAPSDEPIP
ILKYSLLPRLTPLPLRVRLTQRHSGTLLSLMIQYVSNPDLPAPLTDVTFILKLPVDPTLLKVSPKAVLNRPERELKWHVPEIPLKGSPGRLKARMPVDSN
EGEVDEEIEVFGYAKFSMQGKTSLSGICLRPASEGKTDFYEVSHRYESGVYMCN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57460 unknown protein Potri.006G168200
[exp]
0 1
AT2G18030 Peptide methionine sulfoxide r... Potri.007G012900
[exp]
1.73 0.8786 PtrcMsrA5
AT5G05760 ATSYP31, ATSED5... T-SNARE SED 5, syntaxin of pla... Potri.010G191100
[exp]
2.82 0.8667 Pt-SYP31.1
AT3G60540 Preprotein translocase Sec, Se... Potri.002G143100
[exp]
3.16 0.8746
AT1G11890 ATSEC22, SEC22 SECRETION 22, Synaptobrevin fa... Potri.001G165600
[exp]
10.24 0.8738 Pt-SEC22.1
AT5G07960 unknown protein Potri.015G056300
[exp]
10.95 0.8621
AT2G01930 BBR_BPC BPC1, BBR/BPC1,... basic pentacysteine1 (.1.2) Potri.008G140200
[exp]
11.40 0.8191
AT1G13330 AHP2 Arabidopsis Hop2 homolog (.1) Potri.008G118800
[exp]
12.84 0.7786
AT5G22780 Adaptor protein complex AP-2, ... Potri.009G150300
[exp]
14.24 0.8568
AT4G14147 ARPC4 protein binding (.1.2) Potri.017G057400
[exp]
14.45 0.8254
AT3G61790 Protein with RING/U-box and TR... Potri.002G171500
[exp]
15.16 0.7684

Potri.006G168200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.