Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18850 628 / 0 SET domain-containing protein (.1.2) AT3G07670 89 / 1e-18 Rubisco methyltransferase family protein (.1) AT1G14030 71 / 1e-12 Rubisco methyltransferase family protein (.1) AT3G55080 49 / 6e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 96 / 9e-21 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 71 / 1e-12 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G047400 [exp] 44 / 0.0002 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006953 [exp] 647 / 0 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 617 / 0 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10012309 [exp] 90 / 1e-18 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 75 / 5e-14 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 44 / 0.0002 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.006G168900.1 pacid=42768782 polypeptide=Potri.006G168900.1.p locus=Potri.006G168900 ID=Potri.006G168900.1.v4.1 annot-version=v4.1 ATGGATAATAATAATAATAAGCCATGTTCATCTAATAAGATCATCAAGACAAGTGATGGATGTGAAATAGTTCTTGAGCTCTCTCAAAATGCCCCTTTTT TTGATAAAAAGAAGAATTTACTACATAGTATGGGTTTTGATATCAGGGAACAAGTGCAGTTTCATAGATCTTCATGTCCTGATGCAATTGCAACCATCTT GGAAAGAGTACTTCAGATTGCAAGAATTATACATTTAGACGAGGTAGAACTTTATTTTGGCAAGGTCAACGACTGTTCATCACTTGAATATTGGAGCCCC AGGAATGAGGTGGAGGCTCTCAATTCAGTCCTTTCACTTATTAACAGCTACTCCTCTTATGAAAGACAGAAGGAAGTGAACTTCTTGCAAACCTTGCAAG ATGAAGTTCTTAAAAGGATCCAGGAATTCACAGACAAGAACAAAGTGGAGAGTAGAATTGATAGAAGCTGCAGTTGTGACAAAGAAAAGTGTTTAGAAAA ATGGGGGGAGAGCAATGGTGTAAAAACAAGCTTGAAGATAGCATGTGTTGAAGGAGCTGGCAGAGGAGCCATAGCAACAAAAGACCTTAAAGTTGGAGAC ATTGCTTTGGAGATTCCTGTGTCTATTATTATTTCTGAGGAGCATGTGCACAAATCTGACATGTATCATATATTGGAAAAGATTGATGGGATTACCTCTG AGACCATGTTGTTACTATGGAGCATGAAGGAGAGGCACAACTGTTCTTCAAAATTCAAGATTTACTTTGACACTCTGCCAGAGGAATTCAAGACTGGGCT GAGCTTTGGAGTTGATGCAATCATGGCTTTGGATGGAACCTTGCTTTTAGAGGAGATAATGCAAGCAAAAGAGCACTTGCGAGTTCAATATGATGAGCTG GTTCCTCCACTGTGCAAAAATTATCCCGATGTATTTTTGCCAGAGCTCTACACGTGGGAGCAGTTCTTATGGGCTTGTGAACTGTGGTACTCTAATAGCA TGAAAGTTATGTTTGTTGATGGAAAACTGAGGACTTGCTTGATTCCTATTGCAGGCTTTCTTAACCATTCGCTCTACCCACACATCGTTCACTATGGTAA AGTAGATTCTGCAACAAATACACTGAAATTCCCACTCACACGGCCTTGTTGTTTTGGAGAGCAATGCTGCCTTAGCTATGGAAACTTCTCTAGTTCACAT CTAATTACATTCTATGGTTTCATGCCTCAAGGAGACAATCCCTGTGACGTAATTCCATTGGATATTGATGTTGGCGATGCTGATTGTATTGAGGGTTGCC CAACGTCAAGCTGGACTTCTCACATGGTGAGGGGAACTTGGCTCTCAAACAACCATAATATATTCTATTATGGCTTGCCATCTCCATTATTGGATTATCT ACGTGGAGCTCGGAGTCCTGCACCACACACCAAGACCATTGAGATATCAAACCTGGAGAATGAAATAGAAGTTCTCAAAGATCTCCAGTCAACCTTCAGT AGCATGATGGAAAATCTTGGCGACACAGATCTTGTCGACAGTGATGATGCTAGCTGGGATGTGAAGCTGGCATTGGAGTTTAAAGATCTACAAAGAAGGA TTGTCTCCTCAATTTTAACATCATGTGCCGCGGGTCTCAACTTGGTGCAAGATGAATTGTCTGAGCTTTAG
AA sequence Show only first row Show all	>Potri.006G168900.1 pacid=42768782 polypeptide=Potri.006G168900.1.p locus=Potri.006G168900 ID=Potri.006G168900.1.v4.1 annot-version=v4.1 MDNNNNKPCSSNKIIKTSDGCEIVLELSQNAPFFDKKKNLLHSMGFDIREQVQFHRSSCPDAIATILERVLQIARIIHLDEVELYFGKVNDCSSLEYWSP RNEVEALNSVLSLINSYSSYERQKEVNFLQTLQDEVLKRIQEFTDKNKVESRIDRSCSCDKEKCLEKWGESNGVKTSLKIACVEGAGRGAIATKDLKVGD IALEIPVSIIISEEHVHKSDMYHILEKIDGITSETMLLLWSMKERHNCSSKFKIYFDTLPEEFKTGLSFGVDAIMALDGTLLLEEIMQAKEHLRVQYDEL VPPLCKNYPDVFLPELYTWEQFLWACELWYSNSMKVMFVDGKLRTCLIPIAGFLNHSLYPHIVHYGKVDSATNTLKFPLTRPCCFGEQCCLSYGNFSSSH LITFYGFMPQGDNPCDVIPLDIDVGDADCIEGCPTSSWTSHMVRGTWLSNNHNIFYYGLPSPLLDYLRGARSPAPHTKTIEISNLENEIEVLKDLQSTFS SMMENLGDTDLVDSDDASWDVKLALEFKDLQRRIVSSILTSCAAGLNLVQDELSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18850			SET domain-containing protein ...		Potri.006G168900 [exp]	0	1
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Potri.005G235900 [exp]	1.00	0.8199
AT2G32170			S-adenosyl-L-methionine-depend...		Potri.006G023400 [exp]	1.41	0.7565
AT1G34360			translation initiation factor ...		Potri.009G137000 [exp]	3.46	0.7043
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.019G033800 [exp]	3.87	0.6962
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.017G097200 [exp]	10.53	0.5877
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	17.23	0.6548
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Potri.004G013200 [exp]	18.97	0.6280	Pt-ATGLX1.1
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.007G030050 [exp]	22.58	0.5890
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Potri.006G221700 [exp]	24.79	0.7089
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Potri.007G047100 [exp]	28.14	0.6428	Pt-DIN11.1,2OGox15

Compare expression of checked genes

Potri.006G168900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.