Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30260 353 / 2e-123 Integral membrane Yip1 family protein (.1) AT2G18840 346 / 2e-120 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093800 [exp] 370 / 8e-130 AT2G18840 288 / 1e-97 Integral membrane Yip1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025478 [exp] 351 / 2e-122 AT2G18840 392 / 8e-139 Integral membrane Yip1 family protein (.1) Lus10006966 [exp] 339 / 4e-117 AT2G18840 379 / 3e-133 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF04893 [poplar] [flax] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Potri.006G169200.1 pacid=42768348 polypeptide=Potri.006G169200.1.p locus=Potri.006G169200 ID=Potri.006G169200.1.v4.1 annot-version=v4.1 ATGTCGCACAACAGCGACACGATCCCTCTCCACGCATCTTCCCAATCAGATATCGACGAGATCGAGAACCTAATCAACTCCTCCATCCAATCCAGTCCTT CAACAGTCCTACCCGCCCGTCCACCAAGCCCGCCCCGAATACCCGTATCCTCATCTCCATTCATCCAATCAAATCTTCCTCCACCTCCAGCTCAAGCACA GCTCCCCACTCTTCAAAAACCGCCATCTGCTGTCCCCTCCGCCCCTCTACCTCCTCTGCCACCTAGCACTGGTAACTCTGCCGGTGGTAATATTGCTGCT ACTGGGTTCGGGTCCCTTCCGAATACGTTGACGGAGCCAGTTTGGGATACGATAAAAAGAGATCTGTCTAGGATTGTGAGTAATTTGAAGCTGGTTGTGT TTCCAAACCCGTATCGTGAAGATCCGGGTAAGGCCTTGAGAGACTGGGATTTGTGGGGTCCCTTTTTCTTTATCGTCTTCTTAGGACTCACTCTTTCTTG GTCCGCTTCTGTTAAAAAGTCTGAGGTTTTTGCTGTTGCATTTGCACTGCTCGCAGCTGGTGCTGTAATCTTGACACTGAATGTTCTGCTGCTGGGTGGA CACATAATTTTCTTCCAAAGTCTGAGCCTCCTGGGTTACTGTCTCGTTCCTCTAGACATTGGAGCTTTCATCTGCATGTTGAAGGACAATGTAATAATAA AAGTGATTGTGGTATTTGTGACACTGGCTTGGAGCTCGTGGGCTGCCTATCCTTTCATGAGTTCAGCTGTAAACCCAAGAAGAAAGGCACTTGCACTATA CCCTGTATTTCTCATGTATGTATCAGTTGGTTTTCTCATCATCGCCATTGATTAA
AA sequence Show only first row Show all	>Potri.006G169200.1 pacid=42768348 polypeptide=Potri.006G169200.1.p locus=Potri.006G169200 ID=Potri.006G169200.1.v4.1 annot-version=v4.1 MSHNSDTIPLHASSQSDIDEIENLINSSIQSSPSTVLPARPPSPPRIPVSSSPFIQSNLPPPPAQAQLPTLQKPPSAVPSAPLPPLPPSTGNSAGGNIAA TGFGSLPNTLTEPVWDTIKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGG HIIFFQSLSLLGYCLVPLDIGAFICMLKDNVIIKVIVVFVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30260			Integral membrane Yip1 family ...		Potri.006G169200 [exp]	0	1
AT2G18840			Integral membrane Yip1 family ...		Potri.018G093800 [exp]	1.00	0.9313
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.015G077900 [exp]	3.16	0.9200
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.011G125500 [exp]	4.12	0.8978
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	7.48	0.9118	SYP41.2
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.006G104400 [exp]	8.77	0.9087
					Potri.001G297466 [exp]	12.96	0.9088
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	15.39	0.9154
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.003G092300 [exp]	17.32	0.8872	UBP20.1
					Potri.009G092300 [exp]	19.10	0.9095	AGP9.1
AT1G31780			unknown protein		Potri.004G236600 [exp]	19.33	0.8905

Compare expression of checked genes

Potri.006G169200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.