Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 801 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 760 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 710 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 667 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 395 / 3e-132 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 350 / 1e-114 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20480 339 / 7e-110 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 337 / 2e-109 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 329 / 2e-106 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 329 / 3e-106 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094200 [exp] 981 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.001G036900 [exp] 806 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 781 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 750 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.017G112800 [exp] 390 / 3e-130 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 384 / 2e-127 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 374 / 3e-123 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.002G012800 [exp] 365 / 3e-120 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 352 / 4e-115 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026143 [exp] 822 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 800 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10005390 [exp] 793 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10024123 [exp] 783 / 0 AT3G21240 835 / 0.0 4-coumarate:CoA ligase 2 (.1) Lus10021431 [exp] 387 / 7e-129 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 387 / 1e-128 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 375 / 5e-124 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 355 / 3e-116 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 339 / 9e-110 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10025842 [exp] 333 / 2e-107 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G169700.1 pacid=42768761 polypeptide=Potri.006G169700.1.p locus=Potri.006G169700 ID=Potri.006G169700.1.v4.1 annot-version=v4.1 ATGGAGGCGGAAAATGATCAAGCACAAGAATTCATTTTCAGGTCCAAACTCCCTGATATCCACATCCCAAACCACCTCCCTTTACACACTTATTGCTTTG AAAACCTTTCCCGATTCAAAGACAGTCCCTGTTTGATCAATGGCCCTACCGGTGAAATCCACACCTACGCGGATGTTGAGCTCACATCACGCAAAGTCGC TTCCGGCCTCAACAAGTTAGGCATCAAACAAGGCGATGTTATATTGCTGTTGCTCCAAAACTCGCCAGAATTTGTGTTTGCGTTTCTCGGAGCATCAATT ATTGGTGCTATTAGCTCAACCGCAAACCCCTTCTACACTCCCGCTGAGGTCGCAAAGCAAGCAACAGCATCAAAGGCAAAGCTGATAATAACACAGGCAG TTTACGCCGAGAAAGTGCAACAATTCGTCAAGGAAAATGATCATGTCAAAATAGTGACCGTTGACTCTCCACCAGAAAACTACTTGCATTTTTCAGAGTT GACAAATTCTGATGAGGATGATATTCCTGCTGTCGAGATTAACCCTGATGATGTCGTGGCACTCCCTTATTCGTCAGGGACAACAGGTCTCCCTAAAGGT GTCATGTTAACTCATAAAGGGCTCGTTACTAGTGTGGCACAACAAGTAGATGGAGAGAACCCTAACCTCTATTTTCACGAGAAGGATGTGATTCTTTGTG TGTTGCCTTTGTTCCACATCTACTCGCTCAATTCCGTGTTACTTTGTGGGCTAAGAGTTGGTTCAGCAATTTTGCTTATGCAAAAATTCGAGATTGTTAC GTTAATGGAGCTTGTACAAAAATATAAGGTGACAATTGCGCCATTTGTCCCCCCTGTCGTCCTCGCAGTTGCAAAATGTCCAGTCGTTGATAAGTATGAT CTTTCTTCCATTCGGACCGTAATGTCTGGCGCCGCACCAATGGGGAAGGAGCTTGAGGATACAGTAAGGGCTAAGCTGCCTAACGCTAAACTTGGACAGG GATACGGAATGACAGAGGCAGGGCCCGTGCTATCGATGTGCTTGGCATTTGCAAAGGAACCCTTTGAAATTAAATCAGGTGCCTGTGGGACTGTTGTTAG AAACGCCGAGATGAAGATTGTTGACCCCGATACCGGTAGATCCCTGCCACGAAATCAAGCCGGAGAGATTTGCATTAGAGGCAGCCAAATCATGAAAGGT TATCTAAATGACCCTGAGGCCACTGAAAGGACTGTAGACAATGATGGATGGTTGCACACCGGCGACATTGGATACATCGACGGAGATGATGAGCTCTTTA TCGTTGATCGATTGAAAGAATTGATTAAATACAAGGGTTTTCAAGTAGCACCTGCTGAGCTTGAAGCAATGTTGATTGCTCATCCCGACATCTCTGATTG TGCTGTAGTACCCATGAAAGATGAAGCTGCCGGAGAGGTTCCTATTGCTTTTGTGGTGCGAGCAAATGGTTCCAAGATCACCGAGGACGAAATCAAACAA TATATCTCAAAACAGGTGGTCTTTTACAAGAGAATTAGTCGGGTGTTCTTCACGGAAGCGATTCCCAAGGCTCCATCCGGAAAAATCTTGAGAAAAGACC TAAGAGCAAGGCTTGCAACTGGCGATCTTCCTCATTAA
AA sequence Show only first row Show all	>Potri.006G169700.1 pacid=42768761 polypeptide=Potri.006G169700.1.p locus=Potri.006G169700 ID=Potri.006G169700.1.v4.1 annot-version=v4.1 MEAENDQAQEFIFRSKLPDIHIPNHLPLHTYCFENLSRFKDSPCLINGPTGEIHTYADVELTSRKVASGLNKLGIKQGDVILLLLQNSPEFVFAFLGASI IGAISSTANPFYTPAEVAKQATASKAKLIITQAVYAEKVQQFVKENDHVKIVTVDSPPENYLHFSELTNSDEDDIPAVEINPDDVVALPYSSGTTGLPKG VMLTHKGLVTSVAQQVDGENPNLYFHEKDVILCVLPLFHIYSLNSVLLCGLRVGSAILLMQKFEIVTLMELVQKYKVTIAPFVPPVVLAVAKCPVVDKYD LSSIRTVMSGAAPMGKELEDTVRAKLPNAKLGQGYGMTEAGPVLSMCLAFAKEPFEIKSGACGTVVRNAEMKIVDPDTGRSLPRNQAGEICIRGSQIMKG YLNDPEATERTVDNDGWLHTGDIGYIDGDDELFIVDRLKELIKYKGFQVAPAELEAMLIAHPDISDCAVVPMKDEAAGEVPIAFVVRANGSKITEDEIKQ YISKQVVFYKRISRVFFTEAIPKAPSGKILRKDLRARLATGDLPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.006G169700 [exp]	0	1
AT3G52480			unknown protein		Potri.006G204400 [exp]	3.16	0.8274
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	3.46	0.8642
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	4.00	0.8344
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	7.74	0.8064
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Potri.002G165900 [exp]	8.06	0.7626
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	9.16	0.8052
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	10.19	0.7405
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.011G065500 [exp]	12.00	0.7627
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	12.64	0.7747
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.002G096800 [exp]	14.49	0.7254

Compare expression of checked genes

Potri.006G169700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.