Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT4G12560 69 / 1e-12 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G17530 64 / 9e-11 F-box and associated interaction domains-containing protein (.1) AT3G22650 63 / 1e-10 ATSFL61, CEG CEGENDUO, S-LOCUS F-BOX 61, F-box and associated interaction domains-containing protein (.1) AT1G11620 62 / 3e-10 F-box and associated interaction domains-containing protein (.1) AT4G09190 61 / 7e-10 F-box and associated interaction domains-containing protein (.1) AT3G21410 57 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT1G49990 57 / 1e-08 F-box family protein (.1) AT1G53550 57 / 1e-08 F-box family protein (.1) AT3G21120 57 / 2e-08 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G114900 [exp] 520 / 0 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.017G012200 [exp] 323 / 1e-107 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G099733 [exp] 266 / 1e-85 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.018G007900 [exp] 102 / 6e-24 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 99 / 3e-22 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G262900 [exp] 98 / 3e-22 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 98 / 4e-22 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 97 / 1e-21 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013500 [exp] 96 / 2e-21 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008870 [exp] 91 / 2e-19 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 89 / 4e-19 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 88 / 8e-19 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10027824 [exp] 88 / 1e-18 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10037892 [exp] 86 / 6e-18 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10023239 [exp] 85 / 1e-17 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10007847 [exp] 83 / 4e-17 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 83 / 5e-17 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013872 [exp] 82 / 7e-17 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10029725 [exp] 79 / 1e-15 AT3G06240 74 / 3e-14 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF08268 [poplar] [flax] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Potri.006G170300.1 pacid=42770033 polypeptide=Potri.006G170300.1.p locus=Potri.006G170300 ID=Potri.006G170300.1.v4.1 annot-version=v4.1 ATGGCTCTTTCCTTAAGCCGTTACGCTTCGCCATACCGTGAAAGGTTAACTTCCATTTTAAAAGAGAGAGACCAAAAGGAACGGGAGATGTCAGTAGTGA TGGCAACCATGACTGGTCATCCTTTGCCTGAAGATGTGGTAATTGAGATTTTATCACGACTGCCCGTGAAAAATCTATTGCAGTTCAAGTGTGTTTGCAA ATCATGGTATGCTATCATTACAAGTCCCAATTTCATATCCAAGCATCTAAGAAATTACTATAGTAAAAGTGACGACAGCGATTGCCTCCTTGTTCAGTAT TGCGTAACCCAAGCGGGTGAACTTGAATCTCTTGAGTTGTTGCTAGACGAGACACCTAAAGTTTTATCATACGCCTCGCTTGGTAACATGCCGTTTCACA GTCCATTTCTTTGTGGTCCTTGTGATGGAATATTTTATATGTATCGCGATTATTATGATTTTCGTGCTTTCTGGAACCCCGCAGTTAATGAATTCAAATT CTTACCTCCCTTACCCAATCCTCCATCCAATTTTTCTTATAGTCCACAATATGATGCTTATGGTTTTGGACTACATCCAGTAACTAAAGATTACGAAGTG GTGGTTATGAAAGATTACTGGCGTGAAAAACAGGAAGAAAGGGGAGGCTGCAGGTATCCTTTACGTGTATTCGTGTACTCATCTAGTACTGGTTCTTGGA GACATTGGGGAGATTTATCACGTTATTATTATTTGCAAAATAATAAATGTTACATTTGTATGAATGGAGTATTTTTCTGGTTGGGATCATATGAAATATT TGGAGATCCTGAAAAAGTGATTATTTCTTTTGACATGGCTACGGAAACCTGCCAAGAGATACAGCTACCAGATTGTGGCAAGTCACATAATTGTCAGTGT CTTGCAACGTACCAAGACTCCCTGGCTATATTGGATGTTCATGAGAAGTTTCTTCATATGTGGACACTGAATGAGAGGTGTTGGGTAAAAAATTTTTCTA TTGGGCCTCTTCCAGAAATTTCGTATCCGATTGGGCATTGGAAGAACAGTAAGCTGATTTTGGTTTCTGACTCTGGTGAACTAATCTTATGTGATCCCAG CACTCAAGAAATAAGTGGCCTTGGATTAACTAGGTGGGTTCGGTGCGTAGGAGTTTTTGCTTACAAGGAGAGCCTAGTTCTGGTGAATAATGGAAATGGC TGCGAGCGACACAATCAGAAAGCTCGCATAGACTCTGATTTTGTAATCAGGAGTCGAAACGCTAGAAACGAGGAGTGTTTTCTCATGGAATCATATTATG ATGGAATAAGTAGTTTATTTGATTAA
AA sequence Show only first row Show all	>Potri.006G170300.1 pacid=42770033 polypeptide=Potri.006G170300.1.p locus=Potri.006G170300 ID=Potri.006G170300.1.v4.1 annot-version=v4.1 MALSLSRYASPYRERLTSILKERDQKEREMSVVMATMTGHPLPEDVVIEILSRLPVKNLLQFKCVCKSWYAIITSPNFISKHLRNYYSKSDDSDCLLVQY CVTQAGELESLELLLDETPKVLSYASLGNMPFHSPFLCGPCDGIFYMYRDYYDFRAFWNPAVNEFKFLPPLPNPPSNFSYSPQYDAYGFGLHPVTKDYEV VVMKDYWREKQEERGGCRYPLRVFVYSSSTGSWRHWGDLSRYYYLQNNKCYICMNGVFFWLGSYEIFGDPEKVIISFDMATETCQEIQLPDCGKSHNCQC LATYQDSLAILDVHEKFLHMWTLNERCWVKNFSIGPLPEISYPIGHWKNSKLILVSDSGELILCDPSTQEISGLGLTRWVRCVGVFAYKESLVLVNNGNG CERHNQKARIDSDFVIRSRNARNEECFLMESYYDGISSLFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G170300 [exp]	0	1
AT1G59590		ZCF37	ZCF37 (.1)		Potri.002G118200 [exp]	12.72	0.8533	ZCF37.1
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.012G037300 [exp]	12.80	0.8178
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.006G089600 [exp]	15.29	0.8946	RBE.2
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.004G097900 [exp]	17.43	0.8784
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232500 [exp]	21.49	0.8903
AT2G18210			unknown protein		Potri.007G022200 [exp]	23.87	0.8899
AT2G38830			Ubiquitin-conjugating enzyme/R...		Potri.002G046200 [exp]	28.56	0.8677
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	30.24	0.8876
AT5G22890	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G217100 [exp]	30.91	0.8880
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	34.79	0.8793

Compare expression of checked genes

Potri.006G170300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.