Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57590 1091 / 0 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) AT3G22200 73 / 4e-13 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G80600 71 / 2e-12 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 60 / 4e-09 DELTA-OAT ornithine-delta-aminotransferase (.1) AT5G63570 51 / 3e-06 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT3G48730 48 / 2e-05 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT4G39660 47 / 6e-05 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT2G38400 45 / 0.0003 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018500 [exp] 72 / 1e-12 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 69 / 6e-12 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G020900 [exp] 69 / 7e-12 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.005G095800 [exp] 68 / 1e-11 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.011G082800 [exp] 58 / 2e-08 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.007G085600 [exp] 52 / 2e-06 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.015G101100 [exp] 46 / 9e-05 AT3G48730 749 / 0.0 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033915 [exp] 1001 / 0 AT5G57590 987 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Lus10003630 [exp] 981 / 0 AT5G57590 969 / 0.0 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) Lus10010465 [exp] 70 / 4e-12 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 70 / 5e-12 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10008025 [exp] 67 / 3e-11 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 62 / 1e-09 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 59 / 1e-08 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 57 / 3e-08 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10004480 [exp] 54 / 5e-07 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 52 / 2e-06 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00202 [poplar] [flax] Aminotran_3 Aminotransferase class-III CL0023 [poplar] [flax] P-loop_NTPase PF13500 [poplar] [flax] AAA_26 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.006G170400.2 pacid=42767798 polypeptide=Potri.006G170400.2.p locus=Potri.006G170400 ID=Potri.006G170400.2.v4.1 annot-version=v4.1 ATGCTCTTCCTCCACCTCCGCAGTAGCCGCCACCACTCTCACCTCCGCATCCACATCAAATTCCTCTCCACAATTTCCTCACAGCATTTGCACCTCCCAC TCTCCTTCCCAACCTACATGATATGGGGCTCCAACACTTCCCTCGGCAAAACCCTAATTTCCACCGGCCTCGCCTCTTCCTTCCTCCTCTCCCCCCGTAC CACCAACAAAACCCCCAAATTCGTCTACCTCAAACCAATCCAAACCGGTTTCCCTTCCGATTCCGATTCTCATTTCGTCTTTTCTAAACTCTCCTCCCTC GCTTCACTCCGTTCCTCTCCTCTCTCTCTCTCTGCCTCCAATTCCGTCCTCAATTCCTCCCTTTCCGCTGCCAGTTCCCTCTTTGGCGACGATTCTAAGA CCAAGGGTCGGAACTTAGGGATTTATAATTTGAATTTCACTGAGGAGAACAGGTTTGTGAAAGATGGGGTTAATGTGGTTTCGGAGTTGGTTTGTGAAAC TTTGTATGCATGGAAGGAGGCTGTTTCGCCGCACTTGGCAGCAGAGAAGGAGAATGGAGTTGTGGAGGATTCTTTAGTGTTGGAGACTTTAGAGAAGTGT TTGAGAAAAGAAGAGGATAGAAAGGTTGAGGAAATGGATGTTTTTTGCGTGGTTGAGACTGCTGGTGGCGTTGCGAGTCCAGGTCCGTCTGGGACCTTAC AATGTGACTTGTACCGGCCTTTTCGCTTACCTGGTGTTCTTATGGGAGACGGCAGGCTAGGTGGTATTTCTGGAACCATTTCAGCTTATGAGAGTTTAAA ACTTCGAGGGTATGATATTGTTGCTGTTGTTTTGGAAGATCATGGCCTTGTTAATGAGGTGCCATTATTGTCATATTTGCGAAATAGGGTTCCTGTAATT GTGCTTCCACCTGTGCCACAAGATATGTCAAATGACTTGGTGGAATGGTTTGGTGATTCTGATGAAGCATTTAATTCTCTAAAGGAAATAATGATATCAG CTTTTTCAGAAAGAATTCTGAGACTGAATGACATGGCAAAAAAGGCAGTACACACTTTGTGGTGGCCGTTTACTCAGCACAAACTGGTACCAGAAGAGGC TGTTACTGTTATTGATTCAAGATGTGGCGAGAACTTTGCCATTTACAAGGTCCAAGGCAATCAGTTTATTACTCAACAATTTGATGGATGCGCTAGCTGG TGGACCCAAGGACCTGATGCTACTCTGCAGACTGAGCTTGCTAGAGAGATGGGTTATACTGCTGCAAGATATGGTCATGTAATGTTTCCAGAGAATGTTT ATGAGCCGGCGTTGGAATGTGCAGAGCTTTTGCTTGAGGGTGTGGGTAAAGGGTGGGCTTCAAGGACATACTATTCAGATAATGGATCAACGGCAATTGA AATTGCTCTCAAAATGGCATTTCGCAAATTTTCCTTTGATAATGGACTCCTTTTAGATTTTTCCAACAATAACAGAACTGACAAATCTGTCCAACTAAAG GTATTGGCTCTCAAAGGATCTTATCATGGTGACACTTTGGGTGCGATGGAAGCTCAAGCACCATCATCTTATACAGGCTTCCTCCAACAGCCATGGTACA CAGGAAGAGGGCTTTTTCTAGACCCTCCTACAGTGTCTATGTCCAATAATAAATGGAATCTTTCTTTACCTGAGGGAATGCATTGTGAAAATATGATTAA GAAAGACATGAACTTCAGCACTCGTGATGAAATATTTGACAAGAGCAGGGACAAATCAGATCTCACAGGAGTTTATTCCTCATATATATCGCAGAAATTA TTACAATACCCCGGATTAAAAGAATCTATCCATGTTGGAGCGTTGATTATCGAACCAGTTATCCAAGGTGCTGGTGGAATGCTTATGATTGATCCACTTT TCCAAAGGGTGCTTGTAAGTGAGTGCCGAAGTAGAAATATTCCAGTTATATTTGATGAAGTTTTCACAGGTTTCTGGCGTCTTGGAACAGAGTCTGCAGC AGAACTACTTGGTTGTCTACCTGATATAGCCTGCTTTGCAAAGCTGATGACTGGCGGGGTTATACCCTTGGCTGCAACATTGGCCTCAGATGCAGTTTTT GATTCTTTTCTTGGAGAATCAAAGCTCAAAGCCCTTTTGCACGGACACTCATACTCTGCTCATGCTATGGGGTGCTCGGCAGCTGCTACATCAATTAAAT GGTTTAAGGATCCTCAAACAAACCATAATATTATTTCTGGGCGAAGATTGCTTAGGGAGTTATGGAATGCGGAACTGGTGCAACAGATCTCATCACATCC TTCGGTTGAAAGAGTGATAGCATTAGGAACTCTTTTTGCTCTAGAACTAAGAGCAGAAGGGCATAATGTCGGGTACGCATCCCTCTATGCCCGCTCTCTT CTTCAGAAGCTCCGTGAAGATGGTGTTTACATGAGGCCTTTGGGCAATGTCATATATCTCATGTGTGGGCCATGCACATCTCCTGAGATCTGCACAAGCC TACTCATTAAACTTTACACGAGACTTGAAGAGTTCTCCCAGGTACAGCAGGCTTCCTGCTAA
AA sequence Show only first row Show all	>Potri.006G170400.2 pacid=42767798 polypeptide=Potri.006G170400.2.p locus=Potri.006G170400 ID=Potri.006G170400.2.v4.1 annot-version=v4.1 MLFLHLRSSRHHSHLRIHIKFLSTISSQHLHLPLSFPTYMIWGSNTSLGKTLISTGLASSFLLSPRTTNKTPKFVYLKPIQTGFPSDSDSHFVFSKLSSL ASLRSSPLSLSASNSVLNSSLSAASSLFGDDSKTKGRNLGIYNLNFTEENRFVKDGVNVVSELVCETLYAWKEAVSPHLAAEKENGVVEDSLVLETLEKC LRKEEDRKVEEMDVFCVVETAGGVASPGPSGTLQCDLYRPFRLPGVLMGDGRLGGISGTISAYESLKLRGYDIVAVVLEDHGLVNEVPLLSYLRNRVPVI VLPPVPQDMSNDLVEWFGDSDEAFNSLKEIMISAFSERILRLNDMAKKAVHTLWWPFTQHKLVPEEAVTVIDSRCGENFAIYKVQGNQFITQQFDGCASW WTQGPDATLQTELAREMGYTAARYGHVMFPENVYEPALECAELLLEGVGKGWASRTYYSDNGSTAIEIALKMAFRKFSFDNGLLLDFSNNNRTDKSVQLK VLALKGSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPTVSMSNNKWNLSLPEGMHCENMIKKDMNFSTRDEIFDKSRDKSDLTGVYSSYISQKL LQYPGLKESIHVGALIIEPVIQGAGGMLMIDPLFQRVLVSECRSRNIPVIFDEVFTGFWRLGTESAAELLGCLPDIACFAKLMTGGVIPLAATLASDAVF DSFLGESKLKALLHGHSYSAHAMGCSAAATSIKWFKDPQTNHNIISGRRLLRELWNAELVQQISSHPSVERVIALGTLFALELRAEGHNVGYASLYARSL LQKLREDGVYMRPLGNVIYLMCGPCTSPEICTSLLIKLYTRLEEFSQVQQASC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Potri.006G170400 [exp]	0	1
AT5G53620			unknown protein		Potri.015G006700 [exp]	14.28	0.6882
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.005G159300 [exp]	23.15	0.6519
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Potri.003G202300 [exp]	30.33	0.6217
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Potri.013G115400 [exp]	30.49	0.6033	PTP1.1
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	31.46	0.6371
					Potri.007G078000 [exp]	36.46	0.5621
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	37.78	0.5772
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G255532 [exp]	39.77	0.6330
AT1G71220		UGGT, PSL2, EBS...	PRIORITY IN SWEET LIFE 2, EMS-...		Potri.003G018900 [exp]	40.98	0.5952
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	41.37	0.6018

Compare expression of checked genes

Potri.006G170400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.