Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57610 1087 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G24715 463 / 1e-144 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 465 / 5e-144 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 461 / 2e-143 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G04700 456 / 1e-142 PB1 domain-containing protein tyrosine kinase (.1) AT2G35050 456 / 2e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 443 / 1e-136 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 205 / 5e-57 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 206 / 2e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 201 / 1e-53 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G095800 [exp] 1888 / 0 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 460 / 1e-141 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 461 / 2e-141 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 452 / 2e-140 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 450 / 9e-140 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 451 / 6e-139 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 454 / 3e-138 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 444 / 1e-136 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.018G114300 [exp] 444 / 1e-134 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006977 [exp] 1329 / 0 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 800 / 0 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 492 / 1e-162 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 449 / 6e-149 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 456 / 2e-146 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10031173 [exp] 456 / 8e-142 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 455 / 7e-139 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 452 / 9e-139 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 365 / 3e-108 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 202 / 5e-54 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G170700.1 pacid=42768704 polypeptide=Potri.006G170700.1.p locus=Potri.006G170700 ID=Potri.006G170700.1.v4.1 annot-version=v4.1 ATGTTATACTCCATGTGTAATAACAGAATTGAATTCTTGAATAAGATTGATAATCCTGTTGATAACCAGCAAGGTCTCTACGTCATGGATACACCAATGT CTACCACTAATTCCACAGCTGGTTCCAACCCTGGTTCGAACGATGATACACCACGTGTTAAATTACTGTGTAGTTTCTTAGGTAGCATAATGCCTCGACC CCAAGATGGGAAATTGCGTTATGTAGGTGGGGAGACGCGGATTGTGAGTTTGCCTAGGGATATTAGTTATGAGGAGTTGATGAATAAAATGAGAGAGCTT TATGATGGGGCGATGGTGTTGAAGTATCAACAGCCTGATGAGGATCTTGATGCGTTAGTCTCGGTTGTGAATGATGATGATGTGATTAACATGATGGAGG AGTATGAGAAATTGGGTTCTGGGGATGGTTTCACTAGGCTTAGGATTTTTCTGTTTTCGAATACAGACCAAGATGGTTCAGCCCATTATGTTGATGGGGA TGGAAGGGAGAGTGAAAGAAGGTATGTGGATGCACTAAATAATTTGAACGAGGGGCCTGATTTTAGAAGGCACCATCCTGATTCCCCTTTGATGGGTCCA ATTGATGACATTCATTTACAAGAACAGTTTTTTAATGGAATGAATCTTGATGGTGGTCTCCTTAGCCACAGGAGTGGTGAGATGTCAATATCACAGTACA ACTTGCATCATGTTGCTATTGCTCCTAGGTATAATGAGATGGAGGGTCCATGGAGTCCAGCATATTATTCTCCTAGGCATCACGGGCACCATGATCCAAG ACCATTATCAGAGATTCCAAACTCACCCCCTTCTGCACGGTACCGTATGCAGTTTGGGGAATTACCCGATAAAGGGATGGAAAGAATGCCTGAAGAATAT GCTCGGTTGCAGCTAAATCAGCATCCCCCTTTTGATCACCAGGCACAGTATTCTGAAAATGTAGTATGGATGCCTGCTGGAGTAGTAGGTGGTGATAAGG GTGGTTTTCCAGGTAACTTGCTGCACAGTCCCAGTGTTTTTGAAGGGAACAGTGTTTGTGAGCACTGCAGGGGGGCTTTCCCAAGAAATCAACTGCATTT GGAGCAACTCTGCATGGGAAATGGACTTCCTCAGGTTGCTAATCCAGGTGCTGACTGTCCCCCAAACAGGGAGACTTTCATAGTAAATGCAGATGCAAAG GTGCACCACCCCGTGTATCCCAGAGAGCAGAATGATCCACGAGCTGTCTACAATGAGACACAAGGCCATGAAAGCGGATGGATTGTGCAGCATCAGTTGA GTCCCCGCGCTGATGAAGCCAGAAAACATATCTCTGGAGCTGCAAGATTCACTGATCACTACATTGTAGATGGTCCTGGCATGAATTACCCCCCTGGGCA TGGTAATTTGGTGGATGGCCATCATATGTCCTCCCATCACCGTCCTGGACCTGAATTGGGTAATGATGTGTTTCACGATCAAGCTGTGGCTGCTGTCCAC AGCCTACAAGTTTCACCTCCCGAGGAACGCGCAGTACGGTATGGGAATTTTCCTTATGCTTATGGATCTGAGAATCTTCACACATCGCCACATGGACATG CACATCCACAGACTTTATGGAGAAATGCTCAAATTCCAGTACATGTCACTCCTTATGAAGCATCCGGTGCAGCTCCACATGTGAGTAGTACTGTTAATCC ATCGTTTCTTAGGGGCACGACAGAAGGCAGTCAAAGGAGTGGCATTGGCGTGGATAGTCAGAAACCTTGGGTTGAGTCCTCACAGAAAATGCTGGTTTTT GATGGGACAAATTCCTTGGAATATTCTTACGGTCACATGTTGAAATTGAATCCAAATGCTAATGGGGTAGAAAATAATCAGTCGTTTGCTCCAGAACCCC TTCAACCACCGCTCCAACATGAAATGCTAAACTTATCTGCAAAAACAGTTACTTCTGGTTATAACCCAGAGTTAAGTAATACCAATGTAGCTGAAGCATC AAAAGTGGAGGGAACAATCTTTCTTGGTGTAGAAAACCAAGCAAATTGTGTGGGGAAAGTTGAAAACTTGGATGTGTCATGCATGCCTTGTCCGGATCAG GACATGATTGCTGATATGCATGGCCAGGCAGCATTTCCTGAGGCTGTCAATTCCAATTTCTCGAGGTTAGCTGAAGAAAGTGGTGATACAGTGAAAGCGG GAGAAAGAGATCCTTCTGCTGTTCCTGGAGATCCAAACCTGTCAATTAGCCGTATGAGTTTCTTACCTGATTTAATTGCTTCTGTAAAGAAGGCAGCACT GGAAGAGGCTGAAGAGGTGAAAGCTAGAGTCAAAGAAAATGCTGATCCTGCAAATAATGATTCAATATCAGGAGAAGTAGATGATAAGGAGCCTGAAGCT GTGAATACTCATGAAGAAGCAGAGCTGGGATCTGACAATGACAATATAAAAAACAACAAAATTGAGCCTACAAAGGCTGAGGCAGAAGCTATAGAAAGGG GATTGCAGACAATAAAAAATGATGATTTGGAGGAGATTCGTGAATTAGGATCTGGAACATATGGAGCTGTATATCATGGGAAATGGAAGGGTTCTGATGT GGCTATAAAGAGAATAAAAGCCAGCTGCTTTGCCGGGAGACCTTCTGAAAGAGAGCGTTTGATTGCAGATTTCTGGAAGGAGGCTTTGATATTGAGTTCA TTACACCATCCAAATGTTGTTTCTTTCTATGGTATTGTTCGTGATGGCCCTGATGGATCATTAGCAACTGTTACTGAGTTTATGGTTAATGGATCTCTGA AACAGTTTTTGCAGAAGAAGGACAGAACCATTGATCGTCGTAAAAGACTCATCATAGCTATGGATGCTGCTTTTGGAATGGAGTATTTGCATGGGAAGAA CATTGTTCATTTTGATTTGAAATGTGAGAACCTGTTAGTAAATATGAGAGATCCGCAAAGGCCAGTTTGCAAGATTGGTGATCTGGGCTTGTCAAAGGTG AAACAACACACGTTAGTTTCAGGTGGTGTTCGTGGAACTTTGCCCTGGATGGCACCTGAGCTTTTGAGTGGCAAGAACCACATGGTAACAGAGAAGATTG ATGTTTACTCATTTGGGATTGTTATGTGGGAATTACTTACGGGAGAAGAACCTTATGCTGACATGCACTGTGCCTCCATAATTGGAGGAATTGTGAACAA CACATTACGTCCTCAAATTCCCACATGGTGTGATCCAGAGTGGAAGTCTTTGATGGAAAGTTGTTGGGCCTCAGATCCATCGGAGAGACCATCATTCTCA GAGATTTCTCGGAAACTGAGGAACATGGCTGCTGCAATCAATGTGAAATAA
AA sequence Show only first row Show all	>Potri.006G170700.1 pacid=42768704 polypeptide=Potri.006G170700.1.p locus=Potri.006G170700 ID=Potri.006G170700.1.v4.1 annot-version=v4.1 MLYSMCNNRIEFLNKIDNPVDNQQGLYVMDTPMSTTNSTAGSNPGSNDDTPRVKLLCSFLGSIMPRPQDGKLRYVGGETRIVSLPRDISYEELMNKMREL YDGAMVLKYQQPDEDLDALVSVVNDDDVINMMEEYEKLGSGDGFTRLRIFLFSNTDQDGSAHYVDGDGRESERRYVDALNNLNEGPDFRRHHPDSPLMGP IDDIHLQEQFFNGMNLDGGLLSHRSGEMSISQYNLHHVAIAPRYNEMEGPWSPAYYSPRHHGHHDPRPLSEIPNSPPSARYRMQFGELPDKGMERMPEEY ARLQLNQHPPFDHQAQYSENVVWMPAGVVGGDKGGFPGNLLHSPSVFEGNSVCEHCRGAFPRNQLHLEQLCMGNGLPQVANPGADCPPNRETFIVNADAK VHHPVYPREQNDPRAVYNETQGHESGWIVQHQLSPRADEARKHISGAARFTDHYIVDGPGMNYPPGHGNLVDGHHMSSHHRPGPELGNDVFHDQAVAAVH SLQVSPPEERAVRYGNFPYAYGSENLHTSPHGHAHPQTLWRNAQIPVHVTPYEASGAAPHVSSTVNPSFLRGTTEGSQRSGIGVDSQKPWVESSQKMLVF DGTNSLEYSYGHMLKLNPNANGVENNQSFAPEPLQPPLQHEMLNLSAKTVTSGYNPELSNTNVAEASKVEGTIFLGVENQANCVGKVENLDVSCMPCPDQ DMIADMHGQAAFPEAVNSNFSRLAEESGDTVKAGERDPSAVPGDPNLSISRMSFLPDLIASVKKAALEEAEEVKARVKENADPANNDSISGEVDDKEPEA VNTHEEAELGSDNDNIKNNKIEPTKAEAEAIERGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSS LHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLQKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKV KQHTLVSGGVRGTLPWMAPELLSGKNHMVTEKIDVYSFGIVMWELLTGEEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPSERPSFS EISRKLRNMAAAINVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57610			Protein kinase superfamily pro...		Potri.006G170700 [exp]	0	1
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Potri.004G140600 [exp]	1.41	0.8315	ABF1.1
AT5G57610			Protein kinase superfamily pro...		Potri.018G095800 [exp]	6.00	0.8277
AT3G61800			unknown protein		Potri.002G171600 [exp]	6.92	0.7917
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	12.84	0.7773	SEU.1
AT2G27710			60S acidic ribosomal protein f...		Potri.010G236400 [exp]	15.55	0.7619
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Potri.019G049400 [exp]	20.49	0.7767
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.016G106650 [exp]	22.49	0.7353
AT5G41950			Tetratricopeptide repeat (TPR)...		Potri.011G050600 [exp]	24.18	0.7579
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	24.91	0.7632
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	25.69	0.7431

Compare expression of checked genes

Potri.006G170700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.