Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17050 392 / 2e-133 UGT78D2 UDP-glucosyl transferase 78D2 (.1) AT5G17040 357 / 1e-119 UDP-Glycosyltransferase superfamily protein (.1) AT5G17030 351 / 3e-117 UGT78D3 UDP-glucosyl transferase 78D3 (.1) AT1G30530 334 / 9e-111 UGT78D1 UDP-glucosyl transferase 78D1 (.1) AT5G59580 201 / 1e-59 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT1G22400 201 / 6e-59 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 194 / 2e-56 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT5G59590 192 / 3e-56 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT1G22340 192 / 1e-55 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT3G46670 187 / 5e-54 UGT76E11 UDP-glucosyl transferase 76E11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G171268 [exp] 848 / 0 AT5G17050 389 / 5e-132 UDP-glucosyl transferase 78D2 (.1) Potri.006G171156 [exp] 743 / 0 AT5G17050 343 / 1e-115 UDP-glucosyl transferase 78D2 (.1) Potri.018G096000 [exp] 560 / 0 AT5G17050 408 / 1e-139 UDP-glucosyl transferase 78D2 (.1) Potri.006G171128 [exp] 501 / 1e-179 AT5G17050 254 / 1e-82 UDP-glucosyl transferase 78D2 (.1) Potri.013G118700 [exp] 413 / 2e-141 AT5G17050 533 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.013G143900 [exp] 399 / 5e-136 AT5G17050 518 / 0.0 UDP-glucosyl transferase 78D2 (.1) Potri.009G078400 [exp] 314 / 9e-103 AT5G17050 358 / 6e-120 UDP-glucosyl transferase 78D2 (.1) Potri.009G133300 [exp] 313 / 2e-102 AT5G17050 371 / 8e-125 UDP-glucosyl transferase 78D2 (.1) Potri.002G098400 [exp] 200 / 8e-59 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025854 [exp] 343 / 4e-114 AT5G17050 523 / 0.0 UDP-glucosyl transferase 78D2 (.1) Lus10013922 [exp] 185 / 7e-53 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 182 / 5e-52 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10025741 [exp] 179 / 5e-51 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013920 [exp] 177 / 2e-50 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 177 / 3e-50 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 176 / 1e-49 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10031388 [exp] 175 / 3e-49 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 174 / 6e-49 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013921 [exp] 169 / 8e-49 AT1G22380 320 / 3e-107 UDP-glucosyl transferase 85A3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G171100.1 pacid=42770402 polypeptide=Potri.006G171100.1.p locus=Potri.006G171100 ID=Potri.006G171100.1.v4.1 annot-version=v4.1 ATGTCAGAAGCCAGAAATGACTTGAAACATATTGCTGTGCTAGCATTCCCCGTGGCAACTCATGGTCCTCCACTTCTTTCTCTCGTTAGGAGGCTGTCTG CTTCTGCTTCATATGCGAAGTTTTCATTCTTCAGCACAAAGGAGTCCAACAGCAAACTTTTCTCCAAGGAGGACGGGCTGGAAAACATAAAACCGTACAA CGTTAGCGATGGTTTGCCTGAGAACTACAACTTTGCAGGGAATCTCGATGAAGTAATGAATTATTTTTTTAAGGCGACGCCGGGGAATTTTAAGCAAGCA ATGGAAGTGGCGGTGAAAGAGGTAGGGAAGGATTTTACTTGCATAATGAGTGATGCATTTCTTTGGTTTGCAGCGGATTTCGCTCAGGAATTGCATGTCC CTTGGGTGCCCCTTTGGACCTCCAGTTCTCGTTCCCTCCTCTTGGTCCTTGAAACCGATTTGGTCCACCAGAAAATGAGAAGCATTATTAATGAGCCCGA AGATAGAACAATTGACATTCTTCCAGGATTTTCTGAACTACGTGGTTCTGACATACCTAAGGAACTATTCCTTGACGTTAAGGAATCACAATTTGCAGCA ATGTTGTGTAAAATGGGATTAGCATTGCCACAGGCAGCTGTTGTTGCTTCAAACTCTTTTGAAGAATTAGACCCCGATGCGGTGATTCTGTTCAAGTCAA GGCTTCCCAAGTTTCTCAACATCGGCCCCTTCGTGTTGACATCTCCAGATCCGTTCATGTCTGATCCACACGGTTGCCTGGAGTGGCTGGACAAGCAGAA ACAAGAATCTGTGGTGTACATTAGTTTTGGAAGTGTGATAACGCTACCACCCCAAGAGTTAGCAGAGTTAGTAGAAGCGCTAAAGGAATGCAAGTTGCCA TTTCTTTGGTCATTTAGAGGCAATCCTAAGGAAGAATTGCCTGAAGAGTTCTTAGAAAGGACTAAAGAGAAGGGAAAAGTAGTTTCATGGACTCCGCAGT TAAAAGTCTTGCGACACAAAGCAATCGGAGTGTTTGTGACACATAGTGGGTGGAACTCGGTTTTGGATAGTATTGCTGGATGTGTGCCTATGATTTGCAG GCCATTCTTTGGGGATCAAACAGTGAACACGAGGACTATAGAGGCAGTATGGGGTACTGGCCTCGAGATTGAAGGAGGAAGAATCACAAAAGGAGGTTTG ATGAAAGCCTTGAGGCTTATTATGTCAACCGATGAAGGGAACAAAATGAGAAAGAAACTTCAACACCTCCAAGGTCTTGCTTTGGATGCCGTGCAATCAA GTGGTAGCTCTACCAAAAATTTCGAAACTCTGTTAGAGGTGGTCGCCAAGTAA
AA sequence Show only first row Show all	>Potri.006G171100.1 pacid=42770402 polypeptide=Potri.006G171100.1.p locus=Potri.006G171100 ID=Potri.006G171100.1.v4.1 annot-version=v4.1 MSEARNDLKHIAVLAFPVATHGPPLLSLVRRLSASASYAKFSFFSTKESNSKLFSKEDGLENIKPYNVSDGLPENYNFAGNLDEVMNYFFKATPGNFKQA MEVAVKEVGKDFTCIMSDAFLWFAADFAQELHVPWVPLWTSSSRSLLLVLETDLVHQKMRSIINEPEDRTIDILPGFSELRGSDIPKELFLDVKESQFAA MLCKMGLALPQAAVVASNSFEELDPDAVILFKSRLPKFLNIGPFVLTSPDPFMSDPHGCLEWLDKQKQESVVYISFGSVITLPPQELAELVEALKECKLP FLWSFRGNPKEELPEEFLERTKEKGKVVSWTPQLKVLRHKAIGVFVTHSGWNSVLDSIAGCVPMICRPFFGDQTVNTRTIEAVWGTGLEIEGGRITKGGL MKALRLIMSTDEGNKMRKKLQHLQGLALDAVQSSGSSTKNFETLLEVVAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171100 [exp]	0	1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171156 [exp]	1.41	0.9969
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171128 [exp]	2.00	0.9955
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G149200 [exp]	2.23	0.9759
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	2.44	0.9591
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171268 [exp]	3.46	0.9900
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074500 [exp]	7.74	0.8859
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.015G148500 [exp]	8.48	0.8962
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	8.77	0.9552
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	11.66	0.9541
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	12.36	0.9505

Compare expression of checked genes

Potri.006G171100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.