Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 486 / 2e-169 MATE efflux family protein (.1) AT2G34360 460 / 4e-159 MATE efflux family protein (.1) AT1G73700 441 / 7e-152 MATE efflux family protein (.1) AT1G71140 370 / 5e-124 MATE efflux family protein (.1) AT1G15150 356 / 3e-118 MATE efflux family protein (.1) AT1G15160 356 / 3e-118 MATE efflux family protein (.1) AT1G15170 343 / 2e-113 MATE efflux family protein (.1) AT2G04090 339 / 8e-112 MATE efflux family protein (.1) AT2G04100 335 / 3e-110 MATE efflux family protein (.1) AT2G04080 333 / 1e-109 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G170900 [exp] 904 / 0 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.012G051900 [exp] 559 / 0 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 495 / 1e-172 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 394 / 3e-133 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 387 / 3e-130 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 382 / 3e-128 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 376 / 3e-126 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 357 / 8e-119 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 350 / 4e-116 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001318 [exp] 579 / 0 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10041994 [exp] 483 / 7e-168 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017998 [exp] 450 / 1e-154 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 418 / 1e-143 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10019492 [exp] 410 / 1e-139 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10006979 [exp] 405 / 2e-131 AT1G13120 479 / 1e-157 embryo defective 1745 (.1) Lus10029694 [exp] 370 / 7e-124 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 366 / 2e-122 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 365 / 4e-121 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 363 / 5e-121 AT1G71140 571 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.006G171240.1 pacid=42768794 polypeptide=Potri.006G171240.1.p locus=Potri.006G171240 ID=Potri.006G171240.1.v4.1 annot-version=v4.1 ATGGACCTAGAAGAAGAAAAACCAAGTATTGACTTACCATTGATCTCCCCAGAAACTGCAATAAAATCAAGACATGGATTCAGCAAAGTTGAGATTGTTG AGGAGGTGAAGAAGCAGCTTGTGCTAGCAGGGCCTCTTGTTACTGTTAATTTCTTCATTTTTCTTTTACAGGTGATTTCGGTCATGTTTGTGGGTCATCT TGGAGAGCTAGCACTTTCAGGTGCTTCCATGGCCACTTCTTTTGCTTCGGTCACTGGCTTAAGTTTATTGAAAGGACTGGCAAGTGCATTAGACACATAC TGTGGTCAATCTTATGGAGCCAAGCAATACCACATGCTTGGTATACACCTGCAGAGAGCCATGATAGTTCTTCTACTTGCCAGCGTTCCACTTGCAGTTG TATGGGCCAATGCCGGGGCCATTCTGGTGTTCTTGAAGCAGGATCCAGAAATATCAGCTGAGGCTGGGCGTTACGCTCGTTACATGATTCCCACCATTTT TGGTTTTGCAATCCAGGAATGTCATGTCAGATTCTTGCAATCCCAAAACAATGTGATTCCAATGATGGTTTGCGCAGGAATTACGACCTTTCTTCACATC TTTACATGTTGGATTCTTGTCTTTAAGTCCGGACTTGGAAATAAAGGTGCTGCGTTGGCAAATGCTATCTCCTACTGGGCTAACGCACTCTTACTTATTC TTTATGTGAGGATATCTCCCTCTTGTAAGAAGACTTGGACTGGTTTATCAAAGGAGGCCCTGCATGGAATTCCCAATTTCCTTAAACTAGCAATTCCTTC AGCTATAATGGTCAGCTTGGAGATTTGGTCATTTGAGATGATGGTTCTGTTATCTGGTCTTCTTCCAAATCCTAAACTTGAAACATCTGTCCTTTCCATC AGCCTTAACACATGTGCTTTGACTTATATGATACCCCTTGGTCTTAGTGCTGCTATAAGTACAAGAGTCTCAAATGAACTGGGTGCTGGGAAACCACAAG CCGCTCGTCTAGCAGTATGTGTTGCGACATTCTTGGTCGGTACTGAAGGCATTTCGGTGGCCTCCTTAATGATCCTTGGTCGTAATGTATGGGGCACCTT TTATACAACAGAAAAAATAGTAGTGAACTATGTGGGAGAAATGTTGGTTTTTGTTGCAGTATCTCACTTTTTTGACGGAATTCAATCTGTGTTTTCAGGC ACTGCTAGAGGATGTGGATGGCAGAAGATTGGAGCGGTAATTAATCTGGGTGCATACTATCTTCTAGGCATTCCTTGTTCTGTAATCCTTGCTTTTGTCT ATCATTTTGGTGGGAAGGGACTGTGGACAGGCATTATAGTAGCTCTGTTTTTCCAAGCATTAGCGCTTTTTGTAGTAACTCTTCGCACCAACTGGGAGAA CGATTCAAAGAAAGCTAATGACAGGGTCTACCGTGCAGTCATACTTGATAATTCATCAACATAA
AA sequence Show only first row Show all	>Potri.006G171240.1 pacid=42768794 polypeptide=Potri.006G171240.1.p locus=Potri.006G171240 ID=Potri.006G171240.1.v4.1 annot-version=v4.1 MDLEEEKPSIDLPLISPETAIKSRHGFSKVEIVEEVKKQLVLAGPLVTVNFFIFLLQVISVMFVGHLGELALSGASMATSFASVTGLSLLKGLASALDTY CGQSYGAKQYHMLGIHLQRAMIVLLLASVPLAVVWANAGAILVFLKQDPEISAEAGRYARYMIPTIFGFAIQECHVRFLQSQNNVIPMMVCAGITTFLHI FTCWILVFKSGLGNKGAALANAISYWANALLLILYVRISPSCKKTWTGLSKEALHGIPNFLKLAIPSAIMVSLEIWSFEMMVLLSGLLPNPKLETSVLSI SLNTCALTYMIPLGLSAAISTRVSNELGAGKPQAARLAVCVATFLVGTEGISVASLMILGRNVWGTFYTTEKIVVNYVGEMLVFVAVSHFFDGIQSVFSG TARGCGWQKIGAVINLGAYYLLGIPCSVILAFVYHFGGKGLWTGIIVALFFQALALFVVTLRTNWENDSKKANDRVYRAVILDNSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52450			MATE efflux family protein (.1...		Potri.006G171240 [exp]	0	1
AT5G52450			MATE efflux family protein (.1...		Potri.006G170900 [exp]	1.00	0.9427
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	13.03	0.6133
AT3G57440			unknown protein		Potri.006G050900 [exp]	35.00	0.6791
AT5G04490		VTE5	vitamin E pathway gene 5 (.1)		Potri.008G029000 [exp]	35.09	0.6784
					Potri.019G014330 [exp]	38.72	0.6814
AT3G04280		ARR22	response regulator 22 (.1.2.3)		Potri.003G172800 [exp]	51.00	0.6748
					Potri.005G031948 [exp]	52.12	0.6770
AT5G05800			unknown protein		Potri.010G045701 [exp]	55.99	0.6770
					Potri.018G094050 [exp]	64.79	0.6723
AT3G58610			ketol-acid reductoisomerase (....		Potri.013G117532 [exp]	67.74	0.6605

Compare expression of checked genes

Potri.006G171240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.