Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24765 353 / 8e-127 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT1G10630 245 / 8e-84 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 244 / 2e-83 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT1G70490 243 / 4e-83 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 243 / 4e-83 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT5G14670 243 / 5e-83 ATARFA1B ADP-ribosylation factor A1B (.1) AT3G62290 243 / 7e-83 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G17060 217 / 1e-72 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 215 / 1e-71 ATARFB1C ADP-ribosylation factor B1C (.1) AT2G15310 206 / 5e-68 ATARFB1A ADP-ribosylation factor B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096077 [exp] 369 / 9e-133 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 350 / 4e-125 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 347 / 6e-124 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.013G005500 [exp] 245 / 6e-84 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.013G005600 [exp] 245 / 7e-84 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 245 / 7e-84 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 243 / 4e-83 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 243 / 4e-83 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 243 / 4e-83 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020106 [exp] 304 / 6e-107 AT2G24765 314 / 5e-111 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Lus10026910 [exp] 267 / 8e-93 AT2G24765 275 / 4e-96 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Lus10001524 [exp] 244 / 6e-83 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10030884 [exp] 243 / 7e-83 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 244 / 4e-82 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 240 / 7e-82 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 246 / 3e-80 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 244 / 2e-75 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10009571 [exp] 219 / 4e-73 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 216 / 3e-72 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.006G171500.1 pacid=42768776 polypeptide=Potri.006G171550.1.p locus=Potri.006G171500 ID=Potri.006G171500.1.v4.1 annot-version=v4.1 ATGGGAATCTTCTTTTCTAAAATGTTCTCCTCAGTATTTGGCAACAAAGAGGCTCGGATCCTTGTTCTTGGTCTTGACAATGCTGGCAAAACTACAATTC TCTATCGGCTTCAGATGGGTGAAGTTGTATCCACTATTCCAACAATTGGATTTAATGTCGAAACAGTTCAGTACAACAATATCAAATTTCAAGTTTGGGA TCTCGGTGGGCAGACAAGCATCAGACCATACTGGAGATGCTATTTTCCCAACACACAAGCCATTATTTATGTTGTCGATTCAAGTGATACTGACAGGCTC GTGATAGCTAAAGATGAGTTTCATGCAATCTTAGAGGAGGAAGAGTTAAGAGGTGCTGTTGTCCTTATCTATGCAAACAAGCAGGATCTTCCTGGTGCAC TTGATGATGCGGCTGTGACTGAGGCTTTGGAGTTGCACAAGATTAAGAATCGACAATGGGCGATTTTTAAAACTTCTGCCATTAAAGGAGAAGGTCTTTT TGAAGGTTTGGACTGGTTGAGTAATACACTTAAGTCTGGAGGTGGCTAA
AA sequence Show only first row Show all	>Potri.006G171500.1 pacid=42768776 polypeptide=Potri.006G171550.1.p locus=Potri.006G171500 ID=Potri.006G171500.1.v4.1 annot-version=v4.1 MGIFFSKMFSSVFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAIIYVVDSSDTDRL VIAKDEFHAILEEEELRGAVVLIYANKQDLPGALDDAAVTEALELHKIKNRQWAIFKTSAIKGEGLFEGLDWLSNTLKSGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Potri.006G171500 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.004G194400 [exp]	5.47	0.8801
AT5G19050			alpha/beta-Hydrolases superfam...		Potri.008G202300 [exp]	6.16	0.9160
AT2G25610			ATPase, F0/V0 complex, subunit...		Potri.018G032600 [exp]	6.92	0.8972
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Potri.018G087600 [exp]	7.00	0.8944	B5.1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Potri.004G050800 [exp]	7.48	0.8743	SYP61.1
AT1G47830			SNARE-like superfamily protein...		Potri.005G238701 [exp]	8.48	0.8882
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	9.94	0.8851
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053200 [exp]	11.00	0.8782
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	12.44	0.9005
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	13.30	0.9101	AP19.1

Compare expression of checked genes

Potri.006G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.