Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 723 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 683 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 663 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G27100 647 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24720 644 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G24710 631 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 583 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 566 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT1G42540 506 / 3e-164 ATGLR3.3 glutamate receptor 3.3 (.1) AT3G51480 502 / 5e-163 ATGLR3.6 glutamate receptor 3.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174600 [exp] 1835 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172801 [exp] 1811 / 0 AT2G29110 676 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174202 [exp] 1712 / 0 AT2G29110 707 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172900 [exp] 1400 / 0 AT2G29110 619 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096500 [exp] 1237 / 0 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096300 [exp] 1226 / 0 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.018G012100 [exp] 800 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 798 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 786 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 714 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 653 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 608 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 590 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 496 / 2e-160 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 471 / 2e-151 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10035980 [exp] 466 / 1e-148 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027170 [exp] 455 / 3e-145 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10016031 [exp] 452 / 6e-144 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 452 / 2e-143 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.006G172100.2 pacid=42767808 polypeptide=Potri.006G172100.2.p locus=Potri.006G172100 ID=Potri.006G172100.2.v4.1 annot-version=v4.1 ATGAGAATGGCAAAGCAGAAAAGCTTCTTTTGTTTTCTTTGCTTTCTCTTGGTTATTCTGTGGAGTGAGCAGGTGACAATGGGGAAGGTGATTATACGAG CAGGGGTGGTTCTTGATATGAACTCAGCTGTCGGAAAAATGGCAGAGAGCTGCATATCTGCTGCAGAAACTGATTTTTATGCTAGGAATGCTGATTATCG AACTAGAATCTCTCTTGCCACCAGGAATTCCAAAGGGGATGTCGTGACAGCAGCATCTGCAGCACTGGATTTAATGAAAAATGAAGAAGTTGAAGCAATC ATAGGGCCTCAAAGATCATCAGAAGCCAAGTTTGTGATAGAGCTTGGAGCCAAGACACAAGTGCCAATTCTCTCTTTTTCAGCTACTAGTCCTGCTCTCA CTCCAGTTCAAAGCAATTACTTTATCCGGACAGCTCAAAGTGATTCCTCTCAAGTGAAAGCCATTGCCAGCATTGTCGAAACTTATGGTTGGAGGGAAAT TGTTCTAATCTATGAAGGCACAGAATATGGCATTGCTTTGGTTCCATATTTGCTAAATGCCTTGCACGCGATTCGTACTCGAGTTCCCTATGAAAGTTGC ATTCCATCGTCTTCCGATGACACTGAAATCATGAGCGAGCTCCAAAAAATAAAGAAAATGCAGGAAAGCGTGTTTCTGGTGCACATGACAGCCTCCATGG GATCCAGACTATTCTTGCTCGCCAAAAGCGCAGGAATGATGAGTGAAGGGTATGCATGGCTCGTGACAACAGGATTGTCCACCTTACTAGATCCTGTGAA CGCAAAAGTAATGGATTCTATGGAAGGTGTCTTAGGTGTAAAGCCATATGTACCAAAATCAATAGAACTTGAAGGTTTCAAATCAAGATGGAAAAAGAAT TTCAACTCTGAAAACCTCTTTGGTTTATGGGCATATGATACAGTTTGGGCGATAGCAATGGCAGTGGAGAGGGCTGGCATTGTGCATTCTAGGTTCTTAA AACAAAACGCAAGCAACAGGTCAGTTGATCTTGCGGCTTTGGGAATCTCAGAAATGGGGCCAAGACTCCTGAAGTCCATATTAAACACTACATTTGATGG CTTGAGCGGAAAGTTCCAGTTGGTTAAGGGTGAGATGGCACCTTTCGCCTTTGAAATATTCAATGTGGTGGGGAGATCAGAGATGGTTATTGGATATTGG ACACAAAAAGGAGGACTTTCTCAGAGCTTGGATAGCAGTAGCAAAATAACACACTCAAATTCCAAAACCAAACTGAAGCAACCAATTTGGCCAGGACGCG CAATACAACAGCCGAAGAAATTGAGGATTGGGGTTCCAGTGAGAAGCAGTTTTATCGAATTTATAGAAGTCAAATGGGATCAGCAGAACAATGAGACTAA TATTTCAGGCTTCTCTGCACAGGTTTTCTTTGCAGTGCTTGATATATTACCATTTCCCCTTCCGTATGAATTCATACCCTTTATGAACAAAAGCAGTAGG AAGAGTGCCGGGACTTACGATGATCTTCTTCGGCAAATCAAATTTCAGAAATTTGATGCAGTGGTTGGAGATACAACGATAGTGGCTTATCGCTCATCAT ATGTAGATTTCACCTTGCCTTACTCGGAATCAGGCATAACAATGGTGGTTTTGATGAAACGCGATGAGAGGGATAACATGTGGATTTTCTTGAAGCCACT AAGCCCGAAACTTTGGTTAGTAACTGGACTAGCCTTCTTTGTCACAGGTTTAGTGGTATGGTTGCTCGAACACCGTACAAACAGAGAGTTTAGGGGAACA CCAGAGCAACAACTGGGCACAGTTATCTGGTTCTCCTTCTCAACACTGGTCTTTGCACATAGAGAGAGGCCAGAGAACAACCTGACAAGATTTGTCTTGA TCATATGGATATTTGTGGTACTTATTATATCTCAGAGTTACACTGCTAGCTTAGCCTCAATGCTAACAGTACAGCGGATGCATCCCGCATTTGTTGATGT CAAAGAGATCAAGAGGAATAATTACTTTGTTGGACACCAGAAAGATTCTTTTGTGAAAGATTTCCTTAAAAAAGAATTACTTTTCAATGACACGATGTTG AGGGAATATAGCACTCCAGAGGAGTATCACGATGCGTTGTCTAGAGGGTCTCATAATGGTGGTGTGGCTGCTATCTTTGATGAAATTCCCTACGTTAGAC GCTTCCTTAACGACAAGTACCGCTGCTCTAAATTTCAAATGGTAGGACCAACCTATCAAACCGATGGATTTGGCTTTGCCTTCCCACTTAACTCCCCACT AGTCTCTGATTTCTCAAGAGCAATCTTGAATGTCACTGAAGATCATGATAAAATGGAAGAAATTAAGAGGAAAAGCTTTGGTAGGGAAATCACCTGTGAA GATCAAGGAGCTGAAACCTCTTCAGGTGGTCTAAGGTTGTCTAGCTTCGCGGGCCTCTTCCTTATCTCTGGAGTTGCTTCCATATCTTCGCTCCTGATAT ATATCATCAGGTTCCTTCGCTCAAATTATCCTGCTTCAAACACAATGAATGAACAATCCATGTGGCTGAGAATTCTTGAGGTAGCAAAGCGTTTTGACCA GAAAGATCCCTCCGTCCATCATCTTAGGCGAACTGAATCTAGAGTTCACCCTGTCACAGGTCCTGAAAGTATTGGAGCCTCACCTGAGACTGGCAACGTG CATGAAATGACTTCCAATGAAGGAGCCGAAGATGTTGGAGAAAATCAAAACCATAACAATCTTACCTCGGGGAATAGTGGTCCAAATTTTATTGCCTCCA ATGCAGATACTGTTGCCCCTAACACTCCGGAAAGAAACCGAGCTTTACCTGATGCTGCCTATGCGCATGAAATGACTTCCGATGATGGAGCCGAAGTTGT TGTTGGGGATCAAAACCGCGGGAATCCTACCTCAGTGAACAGCGGTACAAATACTAACACAATGTAG
AA sequence Show only first row Show all	>Potri.006G172100.2 pacid=42767808 polypeptide=Potri.006G172100.2.p locus=Potri.006G172100 ID=Potri.006G172100.2.v4.1 annot-version=v4.1 MRMAKQKSFFCFLCFLLVILWSEQVTMGKVIIRAGVVLDMNSAVGKMAESCISAAETDFYARNADYRTRISLATRNSKGDVVTAASAALDLMKNEEVEAI IGPQRSSEAKFVIELGAKTQVPILSFSATSPALTPVQSNYFIRTAQSDSSQVKAIASIVETYGWREIVLIYEGTEYGIALVPYLLNALHAIRTRVPYESC IPSSSDDTEIMSELQKIKKMQESVFLVHMTASMGSRLFLLAKSAGMMSEGYAWLVTTGLSTLLDPVNAKVMDSMEGVLGVKPYVPKSIELEGFKSRWKKN FNSENLFGLWAYDTVWAIAMAVERAGIVHSRFLKQNASNRSVDLAALGISEMGPRLLKSILNTTFDGLSGKFQLVKGEMAPFAFEIFNVVGRSEMVIGYW TQKGGLSQSLDSSSKITHSNSKTKLKQPIWPGRAIQQPKKLRIGVPVRSSFIEFIEVKWDQQNNETNISGFSAQVFFAVLDILPFPLPYEFIPFMNKSSR KSAGTYDDLLRQIKFQKFDAVVGDTTIVAYRSSYVDFTLPYSESGITMVVLMKRDERDNMWIFLKPLSPKLWLVTGLAFFVTGLVVWLLEHRTNREFRGT PEQQLGTVIWFSFSTLVFAHRERPENNLTRFVLIIWIFVVLIISQSYTASLASMLTVQRMHPAFVDVKEIKRNNYFVGHQKDSFVKDFLKKELLFNDTML REYSTPEEYHDALSRGSHNGGVAAIFDEIPYVRRFLNDKYRCSKFQMVGPTYQTDGFGFAFPLNSPLVSDFSRAILNVTEDHDKMEEIKRKSFGREITCE DQGAETSSGGLRLSSFAGLFLISGVASISSLLIYIIRFLRSNYPASNTMNEQSMWLRILEVAKRFDQKDPSVHHLRRTESRVHPVTGPESIGASPETGNV HEMTSNEGAEDVGENQNHNNLTSGNSGPNFIASNADTVAPNTPERNRALPDAAYAHEMTSDDGAEVVVGDQNRGNPTSVNSGTNTNTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	2.44	0.9985
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	2.64	0.9817
AT3G44610			Protein kinase superfamily pro...		Potri.009G146500 [exp]	3.46	0.9904
AT3G52740			unknown protein		Potri.004G203000 [exp]	4.47	0.9898
AT3G56290			unknown protein		Potri.019G056400 [exp]	5.47	0.9792
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G163850 [exp]	6.63	0.9542
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143700 [exp]	6.63	0.9766
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174600 [exp]	6.70	0.9645
AT2G27180			unknown protein		Potri.009G151600 [exp]	6.78	0.9504
					Potri.016G068650 [exp]	8.48	0.9609

Compare expression of checked genes

Potri.006G172100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.