Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G182232 [exp] 524 / 0 ND / Potri.019G061550 [exp] 422 / 2e-146 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1) Potri.003G004301 [exp] 334 / 2e-117 ND / Potri.001G165480 [exp] 337 / 1e-116 AT1G52950 52 / 3e-07 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G320601 [exp] 103 / 8e-27 ND / Potri.006G279850 [exp] 53 / 5e-09 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034056 [exp] 60 / 8e-10 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10036312 [exp] 56 / 1e-08 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10026445 [exp] 50 / 7e-07 AT4G19130 41 / 0.002 Replication factor-A protein 1-related (.1) Lus10030315 [exp] 47 / 1e-05 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10023006 [exp] 46 / 2e-05 ND / Lus10006887 [exp] 43 / 0.0002 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF08646 [poplar] [flax] Rep_fac-A_C Replication factor-A C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G172600.2 pacid=42770155 polypeptide=Potri.006G172600.2.p locus=Potri.006G172600 ID=Potri.006G172600.2.v4.1 annot-version=v4.1 ATGAATCCTTATGAGCACAAGCATCTAAGATTCACATGTCAAGCTTCGATTGTTGACTTTGATTTTCCCAATGGCTGGTGGTATCCAAGCTGTCCAAAAT GCAACAAAAATCTTAGTGGGGGCGAAAACAATTACACATGCATGGATCATGATGCTATCACCTCTCTTCCAATTCCATGGTTTCGCTTAGAATGCATTGT TACCGATGGAGAAGATGTCACTAATTTTCTTCTATTTGGGAAAACTGCTGAGAACTTTTTTGGATCATCGGCCCACCATTATGTCTATGATAAAAAATTT ATTGATCCCTCAGTTCTTCCTCCTGCCATGGCAGCAAAGTTAAACAAAAGCATGATTTTTCAGCTTCGATTTGGTGCTTTCAGATCCATCACCAACAGAT GTGAGGTTATCATTACTAATATCTTTGACAACAGCACAAATAAGAGCATCCATCCTCTAGAAACAGCAACTCCAGAAGCTAAATCATCTCCTACATCCAA GACATCTACTCCATTAAGCTATATGAAACAGGTTCTCAAAGCTCCATCAACTCCACAAAATACTGTCACACAACTCAAGATTGCTCCTGATTCCTTGGAG ACACCACCTCAGAACATATCACCAAACAATGAAACAAGCATAAACAGTGAAGCACGACGTGCACTTGATTTTGAAGATGCAACACAGCAGCTCATTCATG AAGATGAGCATGACAAAGCAATTGAAGTCCAAGGAAACCTGGGAAACATAGCTACATCTGAGACATTTGATCACTCACTTCCACCTTTGAAAAAACAACG GGCAACATCCTCATCTTCATCGAAGAAAAACTAG
AA sequence Show only first row Show all	>Potri.006G172600.2 pacid=42770155 polypeptide=Potri.006G172600.2.p locus=Potri.006G172600 ID=Potri.006G172600.2.v4.1 annot-version=v4.1 MNPYEHKHLRFTCQASIVDFDFPNGWWYPSCPKCNKNLSGGENNYTCMDHDAITSLPIPWFRLECIVTDGEDVTNFLLFGKTAENFFGSSAHHYVYDKKF IDPSVLPPAMAAKLNKSMIFQLRFGAFRSITNRCEVIITNIFDNSTNKSIHPLETATPEAKSSPTSKTSTPLSYMKQVLKAPSTPQNTVTQLKIAPDSLE TPPQNISPNNETSINSEARRALDFEDATQQLIHEDEHDKAIEVQGNLGNIATSETFDHSLPPLKKQRATSSSSSKKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.006G172600 [exp]	0	1
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	1.73	0.7581
AT4G22990			Major Facilitator Superfamily ...		Potri.003G120600 [exp]	2.44	0.7233
					Potri.018G088701 [exp]	9.48	0.7898
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.004G225700 [exp]	12.36	0.6916	ASK4.1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.014G159800 [exp]	20.00	0.7694
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G097001 [exp]	29.54	0.7154
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096100 [exp]	32.18	0.7462
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	50.99	0.6143
AT2G30600			BTB/POZ domain-containing prot...		Potri.005G251300 [exp]	52.53	0.7152
AT5G40700			unknown protein		Potri.019G075700 [exp]	57.24	0.6790

Compare expression of checked genes

Potri.006G172600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.