Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 676 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 645 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 614 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G24720 603 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 601 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 590 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 560 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 524 / 2e-171 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT3G51480 473 / 7e-152 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 469 / 9e-150 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174600 [exp] 1860 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 1799 / 0 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174202 [exp] 1694 / 0 AT2G29110 707 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172900 [exp] 1415 / 0 AT2G29110 619 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096500 [exp] 1199 / 0 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096300 [exp] 1189 / 0 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.018G012100 [exp] 753 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G013200 [exp] 749 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 740 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 670 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 619 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 585 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 568 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 463 / 2e-147 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 449 / 2e-142 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 435 / 4e-137 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 428 / 2e-134 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10026553 [exp] 426 / 7e-134 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10016031 [exp] 422 / 1e-132 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.006G172801.1 pacid=42767589 polypeptide=Potri.006G172801.1.p locus=Potri.006G172801 ID=Potri.006G172801.1.v4.1 annot-version=v4.1 ATGAGAATGGCAAAGCAGAAAAGCTTCTTCTGTTTTCTTTGCTTTCTCTTGGTTATTCTGTGGAGTGAGCAGGTGACAATGGGGAAGGTGATTATACGAG CAGGGGTGGTTCTTGATATGAACTCAGCTGTCGGAAAAATGGCAGAGAGCTGCATATCTGCTGCAGAAACTGATTTTTATGCTAGGAATGCTGATTATCG AACTAGAATCTCTCTTTTCACCAGGAATTCCAAAGGGGATGTCGTGACAGCAGCATCTGCAGCACTGGATTTAATGAAAAATGAAGAAGTTGAAGCAATC ATATGGCCTCAAAGATCATCAGAAGCCAAGTTTGTGACAGAGCTTGGAGCCAAGACACAAGTGCCAATTCTCTCCTTTTCAGCTACTAGTCCTGCTCTCA CTCCAGTTCAAAGCAAGTACTTTATCCGGACAGCTCAAAGCAATTACTTTATCCGGACAGCTCAAAGTGATTCCCCTCAAGTGAAAGTCATTGCCAGCAT TGTCGAAACTTGTGGTTGGAGGGAAATTGTTCTAATCTATGAAGGCACAGAATATGGCATTGCTTTGGTTCCATATTTGCTAAATGCCTTCCACGAGAGT GGTACTCGAGTTCCCTATGAAAGTTGCATTCCATCGTCTTTCGATGACACTGAAATCATGAGCGAGCTCCAGAAAATAAAGAAAATGCAGGAAAGCGTGT TTCTGGTGCACATGACAGCCTCCATGGGATCCAGGCTATTCTTACTCGCCGAAAGCGCAGGAATGATGAGTGAAGGGTATGCATGGTTCGTGACAACAGG ATTGTCCACCTTATTAGATCCTGTGGACGCAAAAGTAATGGATTCTATGGAAGGTGTATTAGGTGTAAAGCCATATGTACCAAAATCAATAGAACTTGAA GGTTTCAAATCAAGATGGAAAAATAATTTCAACTCTGAAAACCTCTTTGGTTTATGGGCATATGATACAGTTTGGGCGATAGCAATGGCAGTGGAGAGGG CTGGCGTTGTGCATTCTAGTTTCTTAAAACAAAACGCAAGCAACAGGTCAGTTGATCTTGCGGCTTTGGGAATCTCAGAAATGGGGCCAAGACTCCTGAA GTCCATATTAAACACTACCTTTGATGGCTTGAGCGGAAAGTTCCAGTTGGTTAAGGGTGAGATGGCACCTTTCGCCTTTGAAATATTCAATGTGGTGGGG AGATCAGAGAGGGTTATTGGATATTGGACAGAAAAAGGAGGACTTTCTCAGAGCTTGGATAGCAGTAGTAAAATATCACACTCAAATTCCAAAACCAAAC TGAAGCAACCAATTTGGCCAGGAGGCACAATACAACAGCCGAAGAAATTGAGGATTGGGGTTCCAGTGAGAAGCGATTTTAGCGAATTTATAAAAGTCGA ATGGGATCAGCAGAGCAATGAGCCTATTGTTTCAGGCTTCTCTGCAGAGGTTTTCCTTGCAGTGCATGATATATTACCATTTCCCCTTCCGTATGAATTC ATACCCTTTATGAATGAAAGTAGTAGGAAGAGTGCCGGGACTTACGATGATATTCTTCGGCAAATCGAACATCAGAAATTTGATGCAGTGGTTGGAGATA CAACGATAGTGGCTTATCGCTCATCATATGTAGATTTCACCTTGCCTTACTCGGAATCAGGCATAACAATGGTGGTTTTGATGAAACGCGATGAGAGGGA TAACATGTGGATTTTCTTGAAGCCACTAAGCCCGAAACTTTGGTTAGTGACTGGAGTAGCCTTCTTTGTCACAGGTTTAGTGGTATGGGTGCTTGAACAC CGTACAAACACAGAGTTTAGGGGAACACCAGAGCAACAACTGGGCACAGTTATTTGGTTCTCCTTCTCAACACTGGTCTTTGCACATAGGGAGAGGCCAG AGAACAACCTAACAAAATTTGTCTTGATCATATGGATATTTGTGGTACTTATTATATCTCAGAGTTACACTGCTAGCTTAGCCTCAATGCTAACAGTACA GCGGATGCATCCCGCATTTGTTTATGTCACAGAGATCAAGAGGAATAATTACTTTGTTGGACACCCGAAAGATTCTTTTGTGAAAGATTTCCTTAAAAAA GAAATACATTTCAATGACACGATGTTGAGGGAATATAACACTCCAGAGGAGTTTCACGATGCGTTGTCTAGAGGATCTGATAATGGTGGTGTCGCTGCTA TCTTCGATGAAATTCCCTACGTTAGACGCTTCCTTAACGACAAGTACCGCTGCTCTAAATTTCAAATGGTAGGACCAACCTATCAAACCGATGGATTTGG CTTTGCCTTCCCACTTAACTCCCCACTAGTCTCTCATATCTCAAGAGCAATCTTGAATGTCACTGAAGATCATGATAAAACGGAAGCAATTAAGAGTAAA AGCTTTGGTAGGGAAATCACCTGTGAAGATCGAGGAGCTGAAACCTCTTCAGGTGGTCTAAGGTTGTCTAGCTTCGCGGGCCTCTTCCTTATCTCTGGAG TTGCTTCCATATCTTCGCTCCTGATATATATCATTAGGTTCCTTTTCTCAAATTATCCTGCTTCGAACACAATGCATGAAGAACAATCCATGTGGCTGAG AATTCTTGAGGTAGCAAAGCGTTTTGACCAGAAAGATCCCTCCGTCCATCATCTTAGGCGAGCTGAATCTAGAGTTCACCCTGTCACAGGTCCTGAAAGT ATTGGAGCCTCACCTGAGACTGGCAACGTGCATGAAATGACTTCCAATGAAGGAGCCGAAGATGTTGGAGAAAATCAAAACCATGACAATCTTACCTCGG GGAATAGTGGTACAAATTTTATTGCCTCCAATGCAGATACTGTTGCCCCTAACACTCCGGAAATAAACCGAGCTTCACCTGATACTGCCTATGTGCATGA AATGACTTCCGATGAAGGAGCCGAAGTTGTTGTTGGGGATCAAAACCGCGGCAATCGTACCTCAGTGAACAGTGGTACAAATACTAACACAATGTTGCCC ACAAAAATCAGCTGTACATGA
AA sequence Show only first row Show all	>Potri.006G172801.1 pacid=42767589 polypeptide=Potri.006G172801.1.p locus=Potri.006G172801 ID=Potri.006G172801.1.v4.1 annot-version=v4.1 MRMAKQKSFFCFLCFLLVILWSEQVTMGKVIIRAGVVLDMNSAVGKMAESCISAAETDFYARNADYRTRISLFTRNSKGDVVTAASAALDLMKNEEVEAI IWPQRSSEAKFVTELGAKTQVPILSFSATSPALTPVQSKYFIRTAQSNYFIRTAQSDSPQVKVIASIVETCGWREIVLIYEGTEYGIALVPYLLNAFHES GTRVPYESCIPSSFDDTEIMSELQKIKKMQESVFLVHMTASMGSRLFLLAESAGMMSEGYAWFVTTGLSTLLDPVDAKVMDSMEGVLGVKPYVPKSIELE GFKSRWKNNFNSENLFGLWAYDTVWAIAMAVERAGVVHSSFLKQNASNRSVDLAALGISEMGPRLLKSILNTTFDGLSGKFQLVKGEMAPFAFEIFNVVG RSERVIGYWTEKGGLSQSLDSSSKISHSNSKTKLKQPIWPGGTIQQPKKLRIGVPVRSDFSEFIKVEWDQQSNEPIVSGFSAEVFLAVHDILPFPLPYEF IPFMNESSRKSAGTYDDILRQIEHQKFDAVVGDTTIVAYRSSYVDFTLPYSESGITMVVLMKRDERDNMWIFLKPLSPKLWLVTGVAFFVTGLVVWVLEH RTNTEFRGTPEQQLGTVIWFSFSTLVFAHRERPENNLTKFVLIIWIFVVLIISQSYTASLASMLTVQRMHPAFVYVTEIKRNNYFVGHPKDSFVKDFLKK EIHFNDTMLREYNTPEEFHDALSRGSDNGGVAAIFDEIPYVRRFLNDKYRCSKFQMVGPTYQTDGFGFAFPLNSPLVSHISRAILNVTEDHDKTEAIKSK SFGREITCEDRGAETSSGGLRLSSFAGLFLISGVASISSLLIYIIRFLFSNYPASNTMHEEQSMWLRILEVAKRFDQKDPSVHHLRRAESRVHPVTGPES IGASPETGNVHEMTSNEGAEDVGENQNHDNLTSGNSGTNFIASNADTVAPNTPEINRASPDTAYVHEMTSDEGAEVVVGDQNRGNRTSVNSGTNTNTMLP TKISCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172801 [exp]	0	1
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	2.00	0.9787
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.016G117100 [exp]	2.82	0.9565
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	15.00	0.9551
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134300 [exp]	16.61	0.9513
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.002G094800 [exp]	18.97	0.9249
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.016G117500 [exp]	20.39	0.8826	Pt-FAD3.5
AT1G58120			unknown protein		Potri.002G104500 [exp]	24.28	0.9250
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.012G096800 [exp]	24.65	0.9455
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Potri.004G030200 [exp]	27.01	0.9426
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.015G074500 [exp]	27.16	0.9454

Compare expression of checked genes

Potri.006G172801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.