Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 619 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 616 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 610 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 601 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT2G29120 597 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 591 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 547 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 525 / 1e-174 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT5G11180 486 / 1e-159 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT1G42540 470 / 3e-153 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174600 [exp] 1505 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172801 [exp] 1462 / 0 AT2G29110 676 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174202 [exp] 1440 / 0 AT2G29110 707 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 1437 / 0 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096500 [exp] 1070 / 0 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096300 [exp] 1063 / 0 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.018G012100 [exp] 726 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 713 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.006G270400 [exp] 709 / 0 AT2G29110 874 / 0.0 glutamate receptor 2.8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 646 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 597 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 567 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 545 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 452 / 3e-146 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 438 / 3e-141 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10035980 [exp] 439 / 5e-141 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10039671 [exp] 434 / 5e-139 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 432 / 8e-139 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10027171 [exp] 429 / 4e-137 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.006G172900.3 pacid=42770635 polypeptide=Potri.006G172900.3.p locus=Potri.006G172900 ID=Potri.006G172900.3.v4.1 annot-version=v4.1 ATGAGAATGGCAAAGCAGAAAAGCTTCTGCTGTTTTCTTTGCTTTCTCTCAGTTATTCTGTGGAGTGAGCAGGTGACAATGGGGAAGGTGATTATACGAG TAGGAGTGGTTCTTGATATGAACTCAGTAGTCGGAAAAACGGCAGAGAACTGCATATCTGCTGCAGCAAACGATTTTTATGCTAGGAATGCTGATTATCG GACTAGAATCTCTCTTGTCACCAGGGATTCCAAAGGGGACGTCGTAACAGCAGCATCTGCAGCACTGGATTTAATGAAAAATGAAGAAGTTGAAGCAATC ATAGGGCCTCAAAGATCATCAGAAGCCAAGTTTGTGATAGAGCTTGGAAACAAGACACAAGTGCCAATTCTCTCTTTTTCAGCTACTAGTCCTGCTCTCA CTCCAGTTCAAAGCAATTACTTTATCCGGACAGCTCAGAGTGATTCCTCTCAAGTGAAAGCCATTGCCAGCATTGTCGAAACTTATGGTTGGAGGGAAAT TGTTCTAATCTATGAAGGCACAGAATATGGCATTGCTTTGGTTCCATATTTGCTACATGCCTTCCACGAGATTGGTACTCGAGTTCCCTATGAAAGTTGC ATTCCATCGTCTTTCGATGACACTGAAATCATGAGCGAGCTCCAGAAAATAAAGAAAATGCAGGAAAGCGTGTTTCTGGTGCACATGACAGCCTCCATGG GATCCAGGCTATTCTTACTCGCCGAAAGCGCAGGAATGATGAGTGAAGGGTATGCATGGCTCGTGACAACAGGATTGTCCACCTTATTAGATCCTGTGGA CGCAAAAGTAATGGATTCTATGCAAGGTGTATTAGGTGTAAAGCCATATGTACCAAAATCAATAGAACTTGAAGGTTTCAAATCAAGATGGAAAAAGAAT TTCAACTCTGAAAACCTCTTTGGTTTATGGGCATATGATACAGTTTGGGCGATAGCAATGGCAGTGGAGAGGGCTGGCATTGTGCATTCTAGTTTCTTAA AACAAAACGCAAGCAACAGGTCAGTTGATCTTGCGGCTTTGGGAATCTCAGAAATGGGGCCAAGACTCCTGAAGTCCATATTAAACACTACCTTTGATGG CTTGAGCGGAAAGTTCCAGTTGGTTAAGGGTGAGATGGCACCTTTCGCCTTTGAAATATTCAATGTGGTGGGGAGATCAGAGAGGGTTATTGGATATTGG ACAGAAAAAGGAGGACTTTCTCAGAGCTTGGATAGCAGTAGTAAAATATCACACTCAAATTCCAAAACCAAACTGAAGCAACCAATTTGGCCAGGAGGCA CAATACAACAGCCGAAGAAATTGAGGATTGGGGTTCCAGTGAGAAGCGATTTTAGCGAATTTATAAAAGTCGAATGGGATCAGCAGAGCAATGAGCCTAT TGTTTCAGGCTTCTCTGCAGAGGTTTTCCTTGCAGTGCATGATATATTACCATTTCCCCTTCCGTATGAATTCATACCCTTTATGAACGAAAGTAGTAGG AAGAGTGCCGGGACTTACGATGATCTTCTTCGGCAAATCGAACATCAGAAATTTGATGCAGTGGTTGGAGATACAACGATAGTGGCTTATCGCTCATCAT ATGTAGATTTCACCTTGCCTTACTCGGAATCAGGCATAACAATGGTGGTTTTGATGAAACGCGATGAGAGGGATAACATGTGGATTTTCTTGAAGCCACT AAGCCCGAAACTTTGGTTAGTAACTGGAGTAGCCTTCTTTGTCACAGGTTTAGTGGTATGGGTGCTCGAACACCGTACAAACACAGAGTTTAGGGGAACA CCAGAGCAACAACTGGGCACAGTTATTTGGTTCTCCTTCTCAACACTGGTCTTTGCACATAGGGAGAGGCCAGAGAACAACCTAACAAAATTTGTCTTGA TCATATGGATGTTTGTGGTACTTATTATATCTCAGAGTTACACTGCTAGCTTAGCCTCAATGCTAACAGTACAGCGGATGCATCCCGCATTTGTTGATGT CACAGAGATCCAGAGGAATAATTACTTTGTTGGACACCATAAAGATTCTTTTGTGAAAGATTTCCTTAAAAAAGAATTACATTTCAATGACACGATGTTG AGGGAATATAGCACTCCAGAGGAGTTTCACGATGCGTTGTCTAGAGGGTCTCATAATGGTGGTGTGGCTGCTATCTTCGAAGAAATTCCCTACGTTAGAC GCTTCCTTAACGACAAGTACCGCTGCTCTAAATTTCAAATGGTAGGACCAACCTATCAAACCGATGGATTTGGCTTTGTGAGTGACTCTCTCTCTCTCTT TCTAAAGTTGTTAGGTTTTAAGTAG
AA sequence Show only first row Show all	>Potri.006G172900.3 pacid=42770635 polypeptide=Potri.006G172900.3.p locus=Potri.006G172900 ID=Potri.006G172900.3.v4.1 annot-version=v4.1 MRMAKQKSFCCFLCFLSVILWSEQVTMGKVIIRVGVVLDMNSVVGKTAENCISAAANDFYARNADYRTRISLVTRDSKGDVVTAASAALDLMKNEEVEAI IGPQRSSEAKFVIELGNKTQVPILSFSATSPALTPVQSNYFIRTAQSDSSQVKAIASIVETYGWREIVLIYEGTEYGIALVPYLLHAFHEIGTRVPYESC IPSSFDDTEIMSELQKIKKMQESVFLVHMTASMGSRLFLLAESAGMMSEGYAWLVTTGLSTLLDPVDAKVMDSMQGVLGVKPYVPKSIELEGFKSRWKKN FNSENLFGLWAYDTVWAIAMAVERAGIVHSSFLKQNASNRSVDLAALGISEMGPRLLKSILNTTFDGLSGKFQLVKGEMAPFAFEIFNVVGRSERVIGYW TEKGGLSQSLDSSSKISHSNSKTKLKQPIWPGGTIQQPKKLRIGVPVRSDFSEFIKVEWDQQSNEPIVSGFSAEVFLAVHDILPFPLPYEFIPFMNESSR KSAGTYDDLLRQIEHQKFDAVVGDTTIVAYRSSYVDFTLPYSESGITMVVLMKRDERDNMWIFLKPLSPKLWLVTGVAFFVTGLVVWVLEHRTNTEFRGT PEQQLGTVIWFSFSTLVFAHRERPENNLTKFVLIIWMFVVLIISQSYTASLASMLTVQRMHPAFVDVTEIQRNNYFVGHHKDSFVKDFLKKELHFNDTML REYSTPEEFHDALSRGSHNGGVAAIFEEIPYVRRFLNDKYRCSKFQMVGPTYQTDGFGFVSDSLSLFLKLLGFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172900 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G173200 [exp]	1.00	0.9760
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	2.00	0.9260
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031300 [exp]	2.44	0.9274
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.002G012800 [exp]	2.82	0.9290	Ptr4CL20
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.011G089700 [exp]	6.70	0.9028
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.002G152200 [exp]	14.28	0.8985
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	22.13	0.8908
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	22.64	0.8463
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	23.83	0.8894
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	28.42	0.7828

Compare expression of checked genes

Potri.006G172900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.