Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 178 / 7e-50 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 152 / 1e-40 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT5G11210 137 / 1e-35 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT2G29120 132 / 5e-34 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G11180 132 / 7e-34 ATGLR2.6 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.6, glutamate receptor 2.6 (.1) AT3G51480 118 / 3e-29 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 116 / 2e-28 ATGLR3.3 glutamate receptor 3.3 (.1) AT5G27100 105 / 7e-25 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G32390 105 / 1e-24 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT1G05200 103 / 4e-24 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174600 [exp] 645 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172801 [exp] 640 / 0 AT2G29110 676 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 637 / 0 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.006G174202 [exp] 535 / 0 AT2G29110 707 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096500 [exp] 374 / 1e-122 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096300 [exp] 359 / 1e-116 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.006G172900 [exp] 198 / 2e-57 AT2G29110 619 / 0.0 glutamate receptor 2.8 (.1) Potri.018G013200 [exp] 187 / 5e-53 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 181 / 1e-50 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 154 / 2e-41 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10016031 [exp] 127 / 4e-32 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10012245 [exp] 125 / 1e-31 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10003436 [exp] 125 / 1e-31 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10039672 [exp] 122 / 2e-30 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10026913 [exp] 122 / 2e-30 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026876 [exp] 119 / 1e-29 AT2G29120 538 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 119 / 2e-29 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10031560 [exp] 115 / 5e-28 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10015118 [exp] 113 / 2e-27 AT2G32400 987 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G173200.2 pacid=42769330 polypeptide=Potri.006G173200.2.p locus=Potri.006G173200 ID=Potri.006G173200.2.v4.1 annot-version=v4.1 ATGCATCCCGCATTTGTTGATGTCAAAGAGATCAGGAGGAATAATTACTTTGTTGGACACCAGAAAAATTCTTTTGTGAAAGATTTCCTTAAAAAAGAAT TACTTTTCAATGACACGATGTTGAAGGAATATAGCACTCCAGAGGAGTATCACGATGCGTTGTCTAGAGGATCCCATAATGGTGGTGTGGCTGCTATCTT TGATGAAATTCCCTACGTTAGACGCTTCCTTGACAAGTACCGCTGCTCTAAATTTCAAATGGTAGGACCAACCTATCAAACCGATGGATTTGGCTTTGCC TTCCCACTTAACTCCCCACTAGTCTCTCATATCTCAAGAGCAATCTTGAATGTCACTGAAGATCATGATAAAATGGAAGCAATTAAGAGGAAAAGCTTCG GTAGGGAAATCACCTGTGAAGATCGAGGAACTGAAACCTCTTCAGGTGGTCTAAGGTTGTCTAGCTTCGCGGGCCTCTTCCTTATCTCTGGAGTTGCTTC CATATCTTCGCTCCTGATATATATCATCAGGTTCCTTTGCTCAAATTATCCTGCTTCAAACACAATGCATGAAGAACAATCCATGTGGCTGAGAATTCTT GAGGTAGCAAAGCGTTTTGACCAGAAAGATCCCTCCGTCCATCATCTTAGGCGAACTGAATCTAGAGTTCACGCTGTCACAGGTCCTGAAAGTATTGGAG CCTCACCTGAGACTGGCAACGTGCATGAAATGACTTCCAATGAAGGAGCCGAAGATGTTGGAGAAAATCAAAACCATGACAATCTTACCTCGGGGAATAG TGGTACAAATTTTATTGCCTCCAATGCAGATACTGTTGCCCCTAACACTCCGGAAATAAACCGAGCTTCACCTGATACTGCCTATGTGCATGAAATGACT TCCGATGAAGGAGCCGAAGTTGTTGTTGGGGATCAAAACCGCGGGAATCCTACCTCAGTGAACAGTGGTACAAATACTAACACAATGTAG
AA sequence Show only first row Show all	>Potri.006G173200.2 pacid=42769330 polypeptide=Potri.006G173200.2.p locus=Potri.006G173200 ID=Potri.006G173200.2.v4.1 annot-version=v4.1 MHPAFVDVKEIRRNNYFVGHQKNSFVKDFLKKELLFNDTMLKEYSTPEEYHDALSRGSHNGGVAAIFDEIPYVRRFLDKYRCSKFQMVGPTYQTDGFGFA FPLNSPLVSHISRAILNVTEDHDKMEAIKRKSFGREITCEDRGTETSSGGLRLSSFAGLFLISGVASISSLLIYIIRFLCSNYPASNTMHEEQSMWLRIL EVAKRFDQKDPSVHHLRRTESRVHAVTGPESIGASPETGNVHEMTSNEGAEDVGENQNHDNLTSGNSGTNFIASNADTVAPNTPEINRASPDTAYVHEMT SDEGAEVVVGDQNRGNPTSVNSGTNTNTM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G173200 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172900 [exp]	1.00	0.9760
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.002G012800 [exp]	1.41	0.9519	Ptr4CL20
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031300 [exp]	1.73	0.9286
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174600 [exp]	9.38	0.9240
AT2G45680	TCP	TCP9	TCP family transcription facto...		Potri.002G152200 [exp]	10.67	0.9170
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.011G089700 [exp]	11.00	0.9010
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.010G035900 [exp]	15.49	0.8944
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	16.12	0.9218
AT5G47100		ATCBL9, CBL9	calcineurin B-like protein 9 (...		Potri.003G084200 [exp]	18.97	0.8629
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	20.78	0.9105

Compare expression of checked genes

Potri.006G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.