Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57660 315 / 8e-106 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT5G24930 268 / 2e-86 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 219 / 3e-69 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT3G02380 211 / 5e-65 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 195 / 5e-59 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 183 / 3e-54 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G48250 83 / 3e-17 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT1G73870 74 / 2e-14 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT5G57180 67 / 7e-12 CIA2 chloroplast import apparatus 2 (.1.2.3) AT5G14370 65 / 1e-11 CCT motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096084 [exp] 619 / 0 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G267700 [exp] 265 / 5e-86 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 249 / 3e-80 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.017G107500 [exp] 229 / 5e-72 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.004G108320 [exp] 219 / 6e-68 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.014G134601 [exp] 81 / 6e-17 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.018G142100 [exp] 71 / 5e-13 AT5G57180 160 / 5e-44 chloroplast import apparatus 2 (.1.2.3) Potri.001G339200 [exp] 67 / 3e-12 AT5G14370 174 / 5e-52 CCT motif family protein (.1) Potri.006G075200 [exp] 67 / 4e-12 AT5G57180 267 / 5e-85 chloroplast import apparatus 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026909 [exp] 260 / 3e-84 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 249 / 6e-80 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10015619 [exp] 237 / 3e-74 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10042431 [exp] 140 / 2e-39 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026238 [exp] 138 / 4e-38 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10037636 [exp] 131 / 5e-36 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10005106 [exp] 93 / 8e-21 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10039695 [exp] 65 / 3e-11 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 64 / 5e-11 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10041096 [exp] 62 / 3e-10 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.006G173600.1 pacid=42770389 polypeptide=Potri.006G173600.1.p locus=Potri.006G173600 ID=Potri.006G173600.1.v4.1 annot-version=v4.1 ATGGGAATTGAAGTTGAGAGCTTAAAGAACTTGACCGGAGGATGGAGTGTTGCGGCTAAACGTTGCGACTCGTGCAAAACGGCAGCTGCAGCTGCGTTTT GCCGGGCGGACTCTGCTTTTTTGTGTCTGAATTGTGACACCAAGATTCACCATAGTGGGGTGAACAGCAAGATCATGTCAAGGCACGAGCGTGTGTGGAT GTGTGAGGTTTGCGAGCAAGCACCCGCTGCGGTTACCTGTAAGGCTGATGCAGCTGCTCTTTGTGTTACTTGTGATGCTGACATCCACTCTGCTAACCCT CTTGCTCGCCGTCATGAACGAGTCCCCGTGGAGCCTTTTTATGACTCTGCTGAATCAATTGTTAAGACTTCCTCGGCGTTTAATTTTCTAGTGCCTGGTG ATCAAAATGGTGTGTCTGCATATGATCATAACGATGAGATCGAGGGTGTTTCGTGGTTGTTGCACGGTAATCACACAACACATGACCTTAATACCAAGAT CAACATCGAGAATCCTGTTGTCAAGACTGGAGATATGTTTTTCTGTGAAATGGATCCCTTTCTTGATTTTGAGTATCAGAATTCGATGGATGGGAGGTAC AAGCAGAGTCATGGTGGGGGTGGTGCTGGAGCTGATAGCGTTGTGCCTGTGCAAAACAAACCAGCTCCGCTTCCCGTGATCGATCATAAAAACTGCTTTG ATATTGATTTCTGTAGATCGAAACTCACCTCTTTCAGCAGCTACCCCTCTCAGTCCCTTAGCCACAGCGTTTCTTCGTCTTCCCTCGATGTTGGTGTTGT TCCTGATGGGAATTCTATGTCCGATATTTCGTATCCCTTCGGCCGAAGCATGAATACTTATACCGATCCAAGCATGCCCATCTCAGGTTCCACTACAAAT CAAGCAGCAGCTCAGTTAGCTGGGATTGACCGCGAAGCTAGAGTTTTGAGGTACAGAGAGAAAAGAAAGAACCGTAAATTCGAAAAAACCATACGGTATG CTTCACGTAAAGCTTACGCAGAAACCAGGCCAAGAATCAAAGGCCGATTCGCGAAGCGAACCGAAATGGAATCCGATATGGACACCCTATATAACTCTCC GAGCTCTGTCCCTTTCCTGGCCGATACTCATTACGGTGTCGTTCCCTCGTTTTGA
AA sequence Show only first row Show all	>Potri.006G173600.1 pacid=42770389 polypeptide=Potri.006G173600.1.p locus=Potri.006G173600 ID=Potri.006G173600.1.v4.1 annot-version=v4.1 MGIEVESLKNLTGGWSVAAKRCDSCKTAAAAAFCRADSAFLCLNCDTKIHHSGVNSKIMSRHERVWMCEVCEQAPAAVTCKADAAALCVTCDADIHSANP LARRHERVPVEPFYDSAESIVKTSSAFNFLVPGDQNGVSAYDHNDEIEGVSWLLHGNHTTHDLNTKINIENPVVKTGDMFFCEMDPFLDFEYQNSMDGRY KQSHGGGGAGADSVVPVQNKPAPLPVIDHKNCFDIDFCRSKLTSFSSYPSQSLSHSVSSSSLDVGVVPDGNSMSDISYPFGRSMNTYTDPSMPISGSTTN QAAAQLAGIDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEMESDMDTLYNSPSSVPFLADTHYGVVPSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.006G173600 [exp]	0	1
AT1G75460			ATP-dependent protease La (LON...		Potri.005G232800 [exp]	6.00	0.9203
AT5G52190			Sugar isomerase (SIS) family p...		Potri.015G140600 [exp]	15.29	0.9134
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	20.04	0.9095
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	20.73	0.9050
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Potri.012G125900 [exp]	36.37	0.8635
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Potri.012G084800 [exp]	37.81	0.8660
AT2G47590		PHR2	photolyase/blue-light receptor...		Potri.002G204000 [exp]	40.19	0.9019	PHR2.3
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	41.27	0.9046
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.010G167600 [exp]	41.58	0.8659
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	50.96	0.8829

Compare expression of checked genes

Potri.006G173600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.