Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57670 653 / 0 Protein kinase superfamily protein (.2) AT2G18890 378 / 1e-126 Protein kinase superfamily protein (.1.2) AT3G05140 353 / 4e-116 RBK2 ROP binding protein kinases 2 (.1) AT5G65530 345 / 4e-113 Protein kinase superfamily protein (.1) AT5G35960 340 / 2e-111 Protein kinase family protein (.1) AT5G18910 336 / 1e-108 Protein kinase superfamily protein (.1) AT5G10520 331 / 3e-107 RBK1 ROP binding protein kinases 1 (.1) AT2G16750 283 / 3e-87 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 266 / 1e-82 Protein kinase superfamily protein (.1.2.3) AT5G63940 267 / 4e-80 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096100 [exp] 1034 / 0 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 403 / 2e-136 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 398 / 2e-134 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.013G028100 [exp] 365 / 4e-120 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 344 / 6e-113 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.007G011700 [exp] 335 / 6e-109 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.010G027301 [exp] 332 / 2e-106 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 290 / 1e-88 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 288 / 6e-88 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019990 [exp] 774 / 0 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10015516 [exp] 659 / 0 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2) Lus10006957 [exp] 375 / 2e-126 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10035949 [exp] 339 / 5e-110 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 337 / 5e-109 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 329 / 8e-107 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10012776 [exp] 333 / 4e-106 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 333 / 9e-106 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012727 [exp] 323 / 1e-102 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10025713 [exp] 292 / 6e-93 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G173700.2 pacid=42768486 polypeptide=Potri.006G173700.2.p locus=Potri.006G173700 ID=Potri.006G173700.2.v4.1 annot-version=v4.1 ATGATCCCTCCAGGTGCTTCCAAGATACTCATTGGCATCTCGTTAGACCCAGATCATAGCATTGAGCTCCTTTCATGGGCAACTAGAGTTCTAGCTCAAT CAAACGACACCATTGTTGCCATCCATGTTCTTGTTGGTGAGGAGTCAAAGAAGCGCGAATTAATAAAGAAAAAACAATGGCAGATTCGACAAGCAAAAGC ACATGTTATAACTGTTCTTGGAGAATTTGCCAGGACATGCCAGTCTAAGCAGATAAATTTGGAGGCTAGAGTAGGATTTAGCTCTGATATTGCTAGAGTT CTAATCGAGGAAGCAAAATCCATTTCGGCTGATTATCTTCTTCTTCGTGGCTCGAGAAACCGATCAAATAGAACTTGGCATGAAGTTATAAGGTATTGTT TTGAGCATGCCCCAGAAACCTGCACGGTACTTTCATTAGGGAAATGTGAACCACAGAAGAATGCAGCAACTATAAAAGCAGAAAATCTTCAACCAAGTTC ATGGTGGTTGAGCAAGAACGCTGATGGTAACACTCGTAGTGGCAGCACTTCCTCCACCATTGACAATCACATCAACTCAGAAACAGAGAAACAGAACTCT TCACCAAGGACTGTATTACATCAACTTGAAGCAGAATCTCACAGTACAGAAGATGATACCTTAAGTTTCGGAGACTCAAGCACTACAGAGTCCCCTCCTC TGGCTACCAATATCAATGGCCGATCAAAGACAAAGAAGCAAATATCTACCTGTAAACTTATCTCTTCAATTTTTGCTTCACCAATGAGAAAAAGAAATAG GATCTTTTTGAACAAAGAAAAGCAGCAGCCTTTGTTAAAGTGCTTCACCTTTGAGGAGATTGCCAATGCAACAAATAACTTCCACCCAGACAATATAGTC GGTAGAGGCGGGTATTCAGAAGTATATAGAGGTGATCTTTCTGACGGGAGAGCTATCGCGGTAAAGATGCTAGCCAAGGACAACAGGGATGCTTCCAAAG AGAAAGAGTTCCTCATGGAATTGGGCATTATTGGGCATGTTTTCCATCCCAATACAGCAAACTTACTTGGGTGCTGTATTGAAAATGGACTCTATCTGAT TTTCAATTTCTCTCAGAATGGAAATTTGGCATCTGCGTTGCACGGTAAAACAGGTGAGTCACTTCAGTGGCCAATACGATACAAGATCGCCCTTGGAGTG GCTAGAGGTCTGCATTATCTGCACAAATGCTGCAAGCACCGAATAATACATCGAGACATAAAAGCCTCTAATGTTCTTCTAGGGCCTGATTATGAGCCGC AGATAACTGATTTTGGGCTTGCAAAATGGCTTCCTAACAAGGTGACTCACCATGCTGTGATTCCAATTGAGGGTACATTTGGATACTTAGCACCAGAGTA CTTCATGCACGGAATTGTGGATGAGAAAACTGATGTTTTTGCATTTGGAGTTCTTCTTTTGGAGATCATAACGGGCCGGAGGCCTGTGGACTCGTCGAAG CAAAACCTTCTCTTATGGGCAAAGCCTCTAATGGAATCTGGAAACATCACGGAACTAGCTGATCCAGAACTGGAAGGGAAATTTGATTCAGAACAAGTGG ATAGAGTTGTTCTAACAGCTTCATATTGTGTGAGAGAATCCTCTACATGGCGTCCATCAATGAGTGAGGTGTTAGAGCTTTTAACCAGTGGGCATGACTC TGAAGTTGCAAGAAGCTGGAGGATGCCAAAGTTTACATCTGATGAGTTAGATGATTACTCCATGATTTTTGGATATGAGGTTCCAGTCGATATTGCATTG GAGGATTATTTGTAA
AA sequence Show only first row Show all	>Potri.006G173700.2 pacid=42768486 polypeptide=Potri.006G173700.2.p locus=Potri.006G173700 ID=Potri.006G173700.2.v4.1 annot-version=v4.1 MIPPGASKILIGISLDPDHSIELLSWATRVLAQSNDTIVAIHVLVGEESKKRELIKKKQWQIRQAKAHVITVLGEFARTCQSKQINLEARVGFSSDIARV LIEEAKSISADYLLLRGSRNRSNRTWHEVIRYCFEHAPETCTVLSLGKCEPQKNAATIKAENLQPSSWWLSKNADGNTRSGSTSSTIDNHINSETEKQNS SPRTVLHQLEAESHSTEDDTLSFGDSSTTESPPLATNINGRSKTKKQISTCKLISSIFASPMRKRNRIFLNKEKQQPLLKCFTFEEIANATNNFHPDNIV GRGGYSEVYRGDLSDGRAIAVKMLAKDNRDASKEKEFLMELGIIGHVFHPNTANLLGCCIENGLYLIFNFSQNGNLASALHGKTGESLQWPIRYKIALGV ARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKVTHHAVIPIEGTFGYLAPEYFMHGIVDEKTDVFAFGVLLLEIITGRRPVDSSK QNLLLWAKPLMESGNITELADPELEGKFDSEQVDRVVLTASYCVRESSTWRPSMSEVLELLTSGHDSEVARSWRMPKFTSDELDDYSMIFGYEVPVDIAL EDYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	0	1
AT2G14620		XTH10, XTR14	xyloglucan endotransglucosylas...		Potri.009G083800 [exp]	1.00	0.8776
AT5G57670			Protein kinase superfamily pro...		Potri.018G096100 [exp]	2.00	0.8339
AT1G79620			Leucine-rich repeat protein ki...		Potri.006G114400 [exp]	7.87	0.8607
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178400 [exp]	8.83	0.7823
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.006G216300 [exp]	12.48	0.8077
AT2G41830			Uncharacterized protein (.1)		Potri.006G052100 [exp]	18.49	0.8266
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.006G207700 [exp]	18.70	0.8234
AT3G44820			Phototropic-responsive NPH3 fa...		Potri.009G150500 [exp]	20.24	0.8096
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	23.36	0.8437
AT3G48200			unknown protein		Potri.012G087400 [exp]	24.24	0.8079

Compare expression of checked genes

Potri.006G173700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.