Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52540 344 / 5e-117 Protein kinase superfamily protein (.1) AT3G15890 330 / 3e-111 Protein kinase superfamily protein (.1) AT3G24550 287 / 4e-91 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70460 285 / 7e-90 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G24540 277 / 6e-89 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G26940 275 / 7e-89 CDG1 CONSTITUTIVE DIFFERENTIAL GROWTH 1, Protein kinase superfamily protein (.1) AT5G38560 282 / 8e-89 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 281 / 3e-88 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G26150 282 / 4e-88 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT4G34440 280 / 5e-88 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G134500 [exp] 448 / 1e-157 AT1G52540 335 / 2e-113 Protein kinase superfamily protein (.1) Potri.003G032100 [exp] 446 / 8e-157 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1) Potri.012G132200 [exp] 438 / 4e-154 AT1G52540 335 / 3e-114 Protein kinase superfamily protein (.1) Potri.001G204000 [exp] 437 / 3e-153 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 294 / 3e-93 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 288 / 2e-91 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 289 / 5e-91 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 289 / 5e-91 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 278 / 5e-91 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019988 [exp] 620 / 0 AT1G52540 348 / 2e-118 Protein kinase superfamily protein (.1) Lus10001323 [exp] 608 / 0 AT1G52540 353 / 3e-120 Protein kinase superfamily protein (.1) Lus10006985 [exp] 604 / 0 AT1G52540 348 / 8e-119 Protein kinase superfamily protein (.1) Lus10031673 [exp] 442 / 3e-155 AT1G52540 338 / 1e-114 Protein kinase superfamily protein (.1) Lus10011490 [exp] 439 / 2e-154 AT3G15890 466 / 2e-165 Protein kinase superfamily protein (.1) Lus10023130 [exp] 415 / 1e-144 AT1G52540 473 / 3e-168 Protein kinase superfamily protein (.1) Lus10011098 [exp] 289 / 6e-92 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10035071 [exp] 288 / 1e-91 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10017898 [exp] 286 / 5e-90 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10003066 [exp] 285 / 2e-89 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G173800.1 pacid=42769401 polypeptide=Potri.006G173800.1.p locus=Potri.006G173800 ID=Potri.006G173800.1.v4.1 annot-version=v4.1 ATGGGTTCATACTTGAGTTGCTGTGGAAACGACAAGGTTGATGAAGCGACAAACATAATAGGTGGAGCTGGTAACAATACATGGAGGATATTCACATACA AGGAGTTGCATACAGCGACTAATGGTTTTAGTGAGGATAATAAGCTTGGAGAAGGAGGCTTTGGAAGTGTCTACTGGGGTAGAACTTCTGATGGTCTTCA GATTGCGGTGAAAAAGTTGAAGGCAATGAATTCGAAAGCCGAAATGGAATTTGCTGTAGAAGTTGAAGTTCTTGGAAGGGTTCGGCACAAGAATTTGCTA GGCCTTAGGGGCTATTGTGCTGGCACTGATCAACGGCTCATAGTATATGATTACATGCCTAACCTCAGCTTGCTGTCTCATCTCCACGGTCATTTTGCTG GGGACGTTCAGCTAGATTGGAAGAAAAGGATGAAGATTGCCATTGGGTCAGCAGAAGGCCTACTGTACTTGCACCATGAGGTCACACCCCACATCATTCA TAGGGACATAAAGGCAAGCAATGTACTTCTGGATTCAGATTTTGAGCCTCTTGTTGCTGATTTTGGTTTTGCGAAGCTAATCCCAGAAGGAGTTAGCCAC ATGACCACTCGTGTTAAGGGAACTTTAGGGTACCTAGCTCCTGAATATGCCATGTGGGGTAAGGTATCAGAGAGCTGTGATGTGTACAGCTTTGGTATTC TCTTGCTAGAAATTGTCACAGGAAGGAAACCGATAGAGAAGCTCCCTGGTGGTGTTAAAAGGACAGTAACAGAATGGGCAGAACCATTGATAACCAAAGG GAGGTTCAAGGACCTTGCTGATCCAAAACTTAGAGGCAATTTTGATGAAAACCAATTCAAGCAAAGTATTAATGTTGCGGCCTTATGTGTTCAAAGTGAG CCTGAAAATAGGCCTACCATGAAGGTTGTTGTTAGCATGCTAAAAGGGTATGATCCAAGAGGCAAGGTGATGCAAACAAGAATTAAAAGTGTCAAGTACA AGGAAGAATTGCTGGAACTTGACCAGACTAGTGACGGTGAAAATGATGGTGGTGGTCTTGAGGAAAGTGAGTATGGAGTTTTTGGTCCCATGGAGGTGCA AAACATGCAAGACCCTTATAAGCGTCATGGAGATGGCAAGAAAATAGGAAAAAATATGTGA
AA sequence Show only first row Show all	>Potri.006G173800.1 pacid=42769401 polypeptide=Potri.006G173800.1.p locus=Potri.006G173800 ID=Potri.006G173800.1.v4.1 annot-version=v4.1 MGSYLSCCGNDKVDEATNIIGGAGNNTWRIFTYKELHTATNGFSEDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLL GLRGYCAGTDQRLIVYDYMPNLSLLSHLHGHFAGDVQLDWKKRMKIAIGSAEGLLYLHHEVTPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSH MTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVTGRKPIEKLPGGVKRTVTEWAEPLITKGRFKDLADPKLRGNFDENQFKQSINVAALCVQSE PENRPTMKVVVSMLKGYDPRGKVMQTRIKSVKYKEELLELDQTSDGENDGGGLEESEYGVFGPMEVQNMQDPYKRHGDGKKIGKNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52540			Protein kinase superfamily pro...		Potri.006G173800 [exp]	0	1
AT3G62040			Haloacid dehalogenase-like hyd...		Potri.002G185300 [exp]	2.23	0.9788
					Potri.001G259224 [exp]	3.46	0.9786
					Potri.014G065700 [exp]	4.89	0.9738
					Potri.012G008845 [exp]	7.48	0.9724
					Potri.012G007866 [exp]	7.93	0.9726
					Potri.001G141900 [exp]	8.24	0.9354
AT1G30110		ATNUDX25	nudix hydrolase homolog 25 (.1...		Potri.010G112000 [exp]	10.86	0.8846
					Potri.013G007900 [exp]	11.83	0.9537
					Potri.002G112400 [exp]	12.36	0.9569
					Potri.016G020750 [exp]	15.49	0.9572

Compare expression of checked genes

Potri.006G173800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.