Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29110 706 / 0 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 673 / 0 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 644 / 0 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G24720 636 / 0 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G27100 629 / 0 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24710 625 / 0 ATGLR2.3 glutamate receptor 2.3 (.1) AT5G11210 574 / 0 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G31710 556 / 0 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1) AT3G51480 491 / 1e-159 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 485 / 1e-156 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G174600 [exp] 1708 / 0 AT2G29110 713 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172100 [exp] 1697 / 0 AT2G29110 724 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172801 [exp] 1692 / 0 AT2G29110 676 / 0.0 glutamate receptor 2.8 (.1) Potri.006G172900 [exp] 1387 / 0 AT2G29110 619 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096500 [exp] 1212 / 0 AT2G29110 662 / 0.0 glutamate receptor 2.8 (.1) Potri.018G096300 [exp] 1207 / 0 AT2G24720 651 / 0.0 glutamate receptor 2.2 (.1) Potri.018G013200 [exp] 768 / 0 AT2G29120 882 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 768 / 0 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 761 / 0 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026235 [exp] 703 / 0 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 644 / 0 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10020109 [exp] 608 / 0 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 586 / 0 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 472 / 2e-151 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039672 [exp] 457 / 2e-146 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10035980 [exp] 453 / 3e-144 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10027171 [exp] 444 / 4e-141 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027170 [exp] 443 / 5e-141 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 442 / 2e-140 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF01094 [poplar] [flax] ANF_receptor Receptor family ligand binding region
Representative CDS sequence Show only first row Show all	>Potri.006G174202.1 pacid=42770583 polypeptide=Potri.006G174202.1.p locus=Potri.006G174202 ID=Potri.006G174202.1.v4.1 annot-version=v4.1 ATGAGAATGGCAAAGCAGAAAAGCTTCTGCTGTTTTCTTTGCTTTCTCCTGGTTATTCTGTGGAGTGAGCAGGTGACAATGGGGAAGGTGATTATACGAG TAGGAGTGGTTCTTGATATGAACTCAGCAGTCGGAAAAACGGCAGAGAGCTGCATATCTGCTGCAGTAAACGATTTTTATGCTAGGAATGCTGATTATCG AACTAGAATCTCTCTTGTCACCAGGGATTCCAAAGGGGATGTCGTAACAGCAGCATCTGCAGCACTGGATTTAATGAAAAATGAAGAAGTTGAAGCAATC ATAGGGCCTCAAAGATCATCAGAAGCCAAGTTTGTGATAGAGCTTGGAGCCAAGACACAAGTGCCAATTCTCTCCTTTTCTGCTACTAGTCCTGCTCTCA CTCCAGTTCAAAGCAATTACTTTATCCGGACAGCTCAAAGTGATTCCCCTCAAGTGAAAGTCATTGCCAGCATTGTCGAAACTTATGGTTGGAGGGAAAT TGTTCTAATCTATGAAGGCACAGAATATGGCATTGCTTTGGTTCCATATTTGCTAAATGCCTTCCACGAGATTGGTACTCGAGTTCCCTATGAAAGTTGC ATTCCATCGTCTTTCGATGACACTGAAATCATGAGCGAGCTCCACAAAATAAAGAAAAAGAAGGAAAGAGTGTTTCTGGTGCACATGACAGCCTCCATGG GATCCAGGCTATTCTTACTCGCCGAAAGCGCAGGAATGATGAGTGAAGGGTATGCATGGCTCGTGACAACAGGATTGTCCACCTTATTAGATCCTGTGGA CGCAAAAGTAATGGATTCTATGGAAGGTGTGTTAGGTGTAAAGCCATATGTACCAAAATCAATAGAACTTGAAGGTTTCAAATCAAGATCGAAAAAGAAT TTCAACTCTGAAAACCTCTTTGGTTTATGGGCATATGATACAGTTTGGGCGATAGCAATGGCAGTGGAGAGGGCTGGCATTGTGCATTCTAGGTTCTTAA AACAAAACGCAAGCAACAGGTCAGTTGATCTTGCGGCTTTGGGAATCTCAGAAATGGGGCCAAGACTCCTGAAGTCCATATTAAACACTACATTTGATGG CTTGAGCGGAAAGTTCCAGTTGGTTAAGGGTGAGATGGAACCTTCCGCCTTTGAAATATTCAATGTGGTGGGGAGATCAGAGAGGGTTATTGGATATTGG ACACAAAAGGGAGGACTTTCTCAGAGCTTGGATAGCAGTAGTAAAATATCACACTCAAATTCCAAAACCAAACTGAAGCAACCAATTTGGCCAGGAGGCG CAATACAACAGCCGAAGAAATTGAGGATTGGGGTTCCAGTGAGAAGCGGTTTTAGGGAATTTATGGAAGTCAAATGGCATCAGCAGAGCAATGAGCCTAT TGTTTTAGGCTTCTCTGCAGAGGTTTTCCTTGCAGTGCATGATATATTACCATTTCCCCTTCCGTATGAATTCATACCCTTTATGAACGATAGTAGGGAG AGTGCCGGGACTTACGATGATCTTCTTCGGCAAATCAAACATCAGAAATTTGATGCAGTGGTTGGAGATACAACGATAGTGGCTTATCGCTCATCATACG TAGATTTCACCTTGCCTTACTCGGAATCAGGCGTAACAATGGTGGTTTTGATGAAACGCGATGAGAGGGATAACATGTGGATTTTCTTGAAGCCACTAAG CCCGAAACTTTGGTTAGTAACTGGAGTAGCCTTCTTTGTCACAGGTTTAGCGGTATGGGTGCTCGAACACCGTACAAACACAGAGTTTAGGGGAACACCA GAGCAACAACTGGGCACAGTTATGTGGTTCTCCTTCTCAACACTGGTCTTTGCACATAGGGAGAGGCCAGAGAACAACCTAACAAAATTTGTCTTGATCA TATGGATATTTGTGGTACTTATTATATCTCAGAGTTACACTGCTAGCTTAGCCTCAATGCTAACAGTACAGCGGATGCATCCCGCATTTGTTGATGTCAC AGAGATCCAGAGGAATAATTACTCTGTTGGACACCAGAAAGATTCTTTTGTGAAAGATTTCCTTAAAAAAGAATTAGATTTCAATGACACGATGTTGAGG GAATATAGCACTCCAGAGGAGTTTCACGATGCGTTGTCTAGTGGGCCTCATAAAGGTGGTGTGGCTGCTATCTTTGATGAAATTCCCTACGTTAGACGCT TCCTTGACAAGTACCGCTGCTCTAAATTTCAAATGGTAGGACCAACCTATCAAACCGATGGATTTGGCTTTGCCTTCCCACTTAACTCCCCACTAGTCTC TCATTTCTCAAGAGCAATCTTGAATGTCACTGAAGATCATGATAAAATGGAAGTAATTAAGAGGAAAAGCTTTGGTAGGGAAATCACCTGTGAAGATCGA GGACCTGAAACCTCTTCAGGTGGTCTTAGGTTGTCTAGCTTCGCGGGCCTCTTCCTTATCTCTGGAGTTGCTTCCATATCTTCGCTCCTGATATATATCA TCAGGTTCCTTCGCTCAAATTATCCTGCTTCAAACACAATGAATGAACAATCCATGTGGCTGAGAATTCTTGAGGTAGCAAAGCGTTTTGACCAGAAAGA TCCCTCCGTCCATCATCTTAGGCGAACTGAATCTAGAGTTCACCCTGTCACAGGTCCTGAAAGTATTGGAGCCTCACCTGAGACTGGCAACGTGCATGAA ATGACTTCCAATGAAGGAGCCGAAGATGTTGGAGAAAATCAAAACCATGACAATCTTACCTCGGGGAATAGTGGTACAAATTTTATAGCCTCCAATGCAT GCAGATACTGTTGCCCCTAA
AA sequence Show only first row Show all	>Potri.006G174202.1 pacid=42770583 polypeptide=Potri.006G174202.1.p locus=Potri.006G174202 ID=Potri.006G174202.1.v4.1 annot-version=v4.1 MRMAKQKSFCCFLCFLLVILWSEQVTMGKVIIRVGVVLDMNSAVGKTAESCISAAVNDFYARNADYRTRISLVTRDSKGDVVTAASAALDLMKNEEVEAI IGPQRSSEAKFVIELGAKTQVPILSFSATSPALTPVQSNYFIRTAQSDSPQVKVIASIVETYGWREIVLIYEGTEYGIALVPYLLNAFHEIGTRVPYESC IPSSFDDTEIMSELHKIKKKKERVFLVHMTASMGSRLFLLAESAGMMSEGYAWLVTTGLSTLLDPVDAKVMDSMEGVLGVKPYVPKSIELEGFKSRSKKN FNSENLFGLWAYDTVWAIAMAVERAGIVHSRFLKQNASNRSVDLAALGISEMGPRLLKSILNTTFDGLSGKFQLVKGEMEPSAFEIFNVVGRSERVIGYW TQKGGLSQSLDSSSKISHSNSKTKLKQPIWPGGAIQQPKKLRIGVPVRSGFREFMEVKWHQQSNEPIVLGFSAEVFLAVHDILPFPLPYEFIPFMNDSRE SAGTYDDLLRQIKHQKFDAVVGDTTIVAYRSSYVDFTLPYSESGVTMVVLMKRDERDNMWIFLKPLSPKLWLVTGVAFFVTGLAVWVLEHRTNTEFRGTP EQQLGTVMWFSFSTLVFAHRERPENNLTKFVLIIWIFVVLIISQSYTASLASMLTVQRMHPAFVDVTEIQRNNYSVGHQKDSFVKDFLKKELDFNDTMLR EYSTPEEFHDALSSGPHKGGVAAIFDEIPYVRRFLDKYRCSKFQMVGPTYQTDGFGFAFPLNSPLVSHFSRAILNVTEDHDKMEVIKRKSFGREITCEDR GPETSSGGLRLSSFAGLFLISGVASISSLLIYIIRFLRSNYPASNTMNEQSMWLRILEVAKRFDQKDPSVHHLRRTESRVHPVTGPESIGASPETGNVHE MTSNEGAEDVGENQNHDNLTSGNSGTNFIASNACRYCCP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	0	1
AT3G44610			Protein kinase superfamily pro...		Potri.009G146500 [exp]	2.00	0.9928
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172100 [exp]	2.44	0.9985
AT3G52740			unknown protein		Potri.004G203000 [exp]	3.16	0.9928
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143700 [exp]	3.31	0.9783
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	5.65	0.9810
AT3G56290			unknown protein		Potri.019G056400 [exp]	7.07	0.9789
AT1G01490			Heavy metal transport/detoxifi...		Potri.002G163400 [exp]	7.07	0.9470
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174600 [exp]	7.74	0.9616
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Potri.009G163850 [exp]	8.30	0.9518
AT2G27180			unknown protein		Potri.009G151600 [exp]	8.48	0.9496

Compare expression of checked genes

Potri.006G174202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.