Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30340 670 / 0 ATDGK7 diacylglycerol kinase 7 (.1) AT5G57690 664 / 0 ATDGK4 diacylglycerol kinase 4 (.1) AT2G18730 664 / 0 ATDGK3 diacylglycerol kinase 3 (.1) AT4G28130 277 / 5e-88 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 271 / 2e-85 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT5G63770 147 / 2e-38 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 142 / 5e-36 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096700 [exp] 870 / 0 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.001G408500 [exp] 272 / 3e-85 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.013G148500 [exp] 264 / 3e-82 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.005G070900 [exp] 144 / 6e-37 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 139 / 3e-35 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.007G097900 [exp] 137 / 2e-34 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.006G172400 [exp] 105 / 1e-27 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019987 [exp] 756 / 0 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 752 / 0 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 749 / 0 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10008907 [exp] 338 / 3e-115 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1) Lus10039747 [exp] 241 / 6e-74 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10031612 [exp] 243 / 9e-74 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10033732 [exp] 238 / 6e-72 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 201 / 1e-58 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10010896 [exp] 131 / 2e-32 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 131 / 2e-32 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [poplar] [flax] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [poplar] [flax] PFK PF00781 [poplar] [flax] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.006G174700.7 pacid=42770555 polypeptide=Potri.006G174700.7.p locus=Potri.006G174700 ID=Potri.006G174700.7.v4.1 annot-version=v4.1 ATGGACTCGTCGACGGCGTCAACGTCGGAAGAATCGGCGGGGAAGATAGTCGCTTCGAGATCATCAGTAATTCAATCAAGTCGAGTGTGTGGGTTATCGG TCTTCCGAATAAACAAAGAGGATTTACAGAGGAAACTGTCGATACCTAAATATCTGCGTCACGCAATTCGAGACTCAATCAGGTCAAAGGATGTTAATGC CGCTGTTGACCGTTGTCAAGAAGGAAGTGGTGGTGGTCGTGAGGCGGCGCCGGACGGGCCTATGGTGGTGTTTGTGAATTCCAAAAGTGGTGGTAGGCAT GGGCCTGAACTTAAAGAGAGGCTTCAACAATTAATGGGAGAGGAGCAGGTTTTTGACCTAAGCGATGTGAATCCCCGTGAATTTGTCGACTATGGTTTGG TTTGTTTAGAGAAGTTGGCTGACCTCGGTGATTATTGTGCCAAAGACACTCGTGACAAGTTGAGAATTATGGTTGCGGGAGGTGATGGTACGGTTGGTTG GGTGTTAGGAAGTCTCACAGAGCTTCACACACAGGATAGGAAGCCAGTTCCTCCAGTAGCGGTCATTCCTCTTGGTACTGGAAATGACCTGTCAAGGAGT TTTGGTTGGGGTGGTGCATTTCCTTTTGCCTGGAAATCAGCTGTCAAAAAATCTCTTCTCAAGGCCATTACAGGTCCAGTGTGCCATTTAGATAGTTGGC ATCTTCTAGTGTCAATGCCGAGTGGAAAAGTGGTGGATCCACCCCATTCCCTGAAACCTACAGAGGAGTGTTCTCTTGATCAGGGTTTAACAATTGAGGG GGAGTTGCCTGAGAAAGTGAACTGCTACGAGGGAGTGTTTTATAATTACTTCAGCATAGGAATGGATGCTCGGGTTGCCTATGGCTTCCATCACCTACGC AATGAAAAACCTAACCTTGCACAAGGTCCTCTTTCAAACAAGTTGATCTACTCTGGATACTCTTGCACTCAGGGTTGGTTTGTCACACCTTGCACAAGTG ATCCAAGTTTGAGGGGACTCAAGAATATCCTCAGGATGCATGTTAAAAAAGTTAATTGCACAGAATGGGAGCAGATACCTGTTCCTAAAAGTGTAAGAGC GATTGTTGCTTTAAATCTTCACAATTATGGGAGTGGAAGAAATCCATGGGGTAGTCCTAAACGACAGTATTTGGAAAAGAAAGGTTTTGTTGAGGCCCAT GTTGATGATGGTCTCCTAGAGATTTTTGGCTTAAAGCATGGATGGCATGCGTCATTCGTCATGGTTGAACTCATCTCCGCCAAACACATAGCCCAGGCTG CAGCAATACGATTGGAAGTAAGGAGTGGAGAATGGAAAGATTCATATATGCAGATGGACGGCGAACCTTGGAAGCAGCCCATGAGCAAGGAATACTCAAC ATTTGTGGAAATTAAGAGGGTGCCTTTTCAATCTCTCATGGTTAATGGATTATGA
AA sequence Show only first row Show all	>Potri.006G174700.7 pacid=42770555 polypeptide=Potri.006G174700.7.p locus=Potri.006G174700 ID=Potri.006G174700.7.v4.1 annot-version=v4.1 MDSSTASTSEESAGKIVASRSSVIQSSRVCGLSVFRINKEDLQRKLSIPKYLRHAIRDSIRSKDVNAAVDRCQEGSGGGREAAPDGPMVVFVNSKSGGRH GPELKERLQQLMGEEQVFDLSDVNPREFVDYGLVCLEKLADLGDYCAKDTRDKLRIMVAGGDGTVGWVLGSLTELHTQDRKPVPPVAVIPLGTGNDLSRS FGWGGAFPFAWKSAVKKSLLKAITGPVCHLDSWHLLVSMPSGKVVDPPHSLKPTEECSLDQGLTIEGELPEKVNCYEGVFYNYFSIGMDARVAYGFHHLR NEKPNLAQGPLSNKLIYSGYSCTQGWFVTPCTSDPSLRGLKNILRMHVKKVNCTEWEQIPVPKSVRAIVALNLHNYGSGRNPWGSPKRQYLEKKGFVEAH VDDGLLEIFGLKHGWHASFVMVELISAKHIAQAAAIRLEVRSGEWKDSYMQMDGEPWKQPMSKEYSTFVEIKRVPFQSLMVNGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Potri.006G174700 [exp]	0	1
AT5G62570			Calmodulin binding protein-lik...		Potri.015G071800 [exp]	1.41	0.7785
AT5G36930			Disease resistance protein (TI...		Potri.011G012475 [exp]	19.79	0.7677
AT3G57030			Calcium-dependent phosphotries...		Potri.016G037900 [exp]	25.29	0.6709
AT1G59970			Matrixin family protein (.1)		Potri.008G027600 [exp]	35.66	0.7273
AT5G36930			Disease resistance protein (TI...		Potri.011G014101 [exp]	39.57	0.7124
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Potri.011G091200 [exp]	39.94	0.7012	MRP1.1
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Potri.013G065700 [exp]	40.32	0.7520
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148100 [exp]	44.03	0.7476
AT1G61040		VIP5	vernalization independence 5, ...		Potri.011G047900 [exp]	44.54	0.6982
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.003G112101 [exp]	51.96	0.6609

Compare expression of checked genes

Potri.006G174700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.