Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46550 327 / 1e-108 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT2G45470 119 / 9e-30 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 102 / 9e-24 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT5G55730 97 / 1e-21 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT4G12730 89 / 3e-19 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G60490 80 / 8e-17 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT1G03870 76 / 1e-15 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G04780 76 / 2e-15 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G44130 75 / 5e-15 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT5G03170 72 / 4e-14 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097000 [exp] 601 / 0 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.014G071700 [exp] 125 / 1e-31 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 97 / 5e-22 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 90 / 1e-19 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G162900 [exp] 87 / 3e-19 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.001G367900 [exp] 88 / 1e-18 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.002G223300 [exp] 84 / 3e-18 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.012G127900 [exp] 80 / 7e-17 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151300 [exp] 80 / 1e-16 AT5G03170 167 / 4e-51 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040821 [exp] 456 / 5e-159 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 443 / 4e-154 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10009235 [exp] 122 / 1e-30 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10022517 [exp] 98 / 3e-22 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10016617 [exp] 96 / 3e-21 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10001178 [exp] 90 / 2e-19 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 87 / 2e-18 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10006391 [exp] 87 / 3e-18 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 84 / 1e-17 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10012351 [exp] 82 / 2e-17 AT2G04780 223 / 9e-73 FASCICLIN-like arabinoogalactan 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.006G174900.1 pacid=42768752 polypeptide=Potri.006G174900.1.p locus=Potri.006G174900 ID=Potri.006G174900.1.v4.1 annot-version=v4.1 ATGGCACGAATCAATCCAGCCATTTCCCAAATTACCCCAACAACCACACTTACCTATTTCCTCCTCCTCCTCCTCGCCACCACCACTACCATCACCCCAA TTTTAGCCATAACCAACCTAACAGCCCTCCTCTCCTCCTTCCCTGACTTCTCCTCCTTCACTTCCCTCCTCGCTTCCACACCCTCTATAACCTCAGACCT CTCCAACCGCTCTGCTCTCACTCTCTTAGTCATCCCAAATTCTTACCTTTCCTCCTCTTTAGACCTCACGCGCCGCCTCTCTCCTTCTTCCCTCACCGAC CTCCTTCGTTACCACATCCTCCTCCAATACCTCTCTTCCTCCGACCTCCACCAACTTCCCCCAGCTGGGGCCCTCATCACCACCCTCTTCCAAACAACCG GCCGTGCCTCCTCCAACTTTGGCTCTGTTAACATAACTCGAAACCCAGTAACAAACGCAATCACTATTTCCTCTCCATCCCCTTTTTCCTCCTCAAACGC CACGGTTTTGTCCCTGATAAAGACTCTTCCTTACAATGTTTCAATAATTTCAGTGAATTCTCTTTTAGTCCCATATGGGTTTGATTTGATGGCATCAGAA ACAAGGCCCACATTGGGTTTGAATATTACTAAAGCATTACTTGATGGCCGCAGTTTTTTTGTCGCAGCATCTTTGTTATCTGCTTCTGGTGTTGTAGAGG AATTCGAAGCCGATGAAGGAGGAGCTGGAATAACTCTTTTTGTGCCTACTGATTCTGCATTTTCAGATCTGTCGGAAACTGATGTTAGTTTACAGTCATT GCCAGCTGATAAGAAAGCTGATGTCTTGAAATTCCATGTCTTACATTCTTATTACCCTCTGGGTTCATTGGAGTCTATTGTTAATCCTGTGCAGCCTACA TTGGCTACTGAAGATATGGGTGCTGGCAGTTTTACTTTAAATATTTCGAGGGCTAATGGGTCGGTTGCGATTGATTCAGGGATTGTTCTGGCGTCTGTTA CGCAGACGGTTTTTGATCAGAACCCTGTTGCAATTTTTGGGGTTTCAAAAGTGCTTTTGCCTAAAGAGATTTTTGGGAGGAATCCAGTGTTGACTAGTAA GCCAGGGAATTCTGATATGGGAAATGCACTGCCGCCTGCTGTTGCTTTGTCGCCAGAGAGTTCGCCGAAAATGTTGTCCTCTGCACCGGGTGTTAGAGAA GAGAAGTCTGGAGTTGGAGGGTTACAGCGGTTCAGTACTCTACCTTTGCTTTGTGCTCTTGTTGTATGGTATTGTATTTAG
AA sequence Show only first row Show all	>Potri.006G174900.1 pacid=42768752 polypeptide=Potri.006G174900.1.p locus=Potri.006G174900 ID=Potri.006G174900.1.v4.1 annot-version=v4.1 MARINPAISQITPTTTLTYFLLLLLATTTTITPILAITNLTALLSSFPDFSSFTSLLASTPSITSDLSNRSALTLLVIPNSYLSSSLDLTRRLSPSSLTD LLRYHILLQYLSSSDLHQLPPAGALITTLFQTTGRASSNFGSVNITRNPVTNAITISSPSPFSSSNATVLSLIKTLPYNVSIISVNSLLVPYGFDLMASE TRPTLGLNITKALLDGRSFFVAASLLSASGVVEEFEADEGGAGITLFVPTDSAFSDLSETDVSLQSLPADKKADVLKFHVLHSYYPLGSLESIVNPVQPT LATEDMGAGSFTLNISRANGSVAIDSGIVLASVTQTVFDQNPVAIFGVSKVLLPKEIFGRNPVLTSKPGNSDMGNALPPAVALSPESSPKMLSSAPGVRE EKSGVGGLQRFSTLPLLCALVVWYCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.006G174900 [exp]	0	1
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.009G017300 [exp]	2.00	0.6432
AT4G22580			Exostosin family protein (.1)		Potri.001G120800 [exp]	3.16	0.6392
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.018G101700 [exp]	13.07	0.5635	GER1.3
AT5G08415			Radical SAM superfamily protei...		Potri.013G136000 [exp]	16.24	0.6015
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.002G019500 [exp]	21.49	0.6066	Pt-ARAC4.1
AT1G01730			unknown protein		Potri.002G158500 [exp]	24.18	0.5743
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	29.25	0.6325
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.010G183300 [exp]	36.05	0.6216
AT3G50620			P-loop containing nucleoside t...		Potri.007G042100 [exp]	40.39	0.5548
AT5G56540		ATAGP14, AGP14	arabinogalactan protein 14 (.1...		Potri.003G220900 [exp]	44.78	0.5409

Compare expression of checked genes

Potri.006G174900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.