Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24255 70 / 8e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) AT4G29090 60 / 2e-10 Ribonuclease H-like superfamily protein (.1) ATMG00320 46 / 2e-06 ATMG00320.1, ORF127 unknown protein ATMG00310 39 / 0.0006 ATMG00310.1, ORF154 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G185050 [exp] 167 / 7e-53 AT3G24255 64 / 2e-12 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) Potri.002G067201 [exp] 142 / 4e-43 AT3G24255 68 / 5e-14 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) Potri.010G000101 [exp] 84 / 1e-18 AT3G24255 193 / 1e-53 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1), RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.2) Potri.018G042350 [exp] 53 / 4e-08 AT4G29090 81 / 3e-16 Ribonuclease H-like superfamily protein (.1) Potri.012G064850 [exp] 40 / 0.0007 ATMG00310 108 / 5e-30 RNA-directed DNA polymerase (reverse transcriptase)-related family protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G175124.1 pacid=42767189 polypeptide=Potri.006G175124.1.p locus=Potri.006G175124 ID=Potri.006G175124.1.v4.1 annot-version=v4.1 ATGGAGAAATTGGTGTGTTTAACTACGAAGAAAGTTTCAGAGAAGATTTGGCATCCTATCCACCTTTTGAGAGGGGGGCCAGGTATATCTCACTTATTCT TCGCTAATGATGTCTTGTTATTTGCTAAAGCCAGTACTGCTCAGATGCAGATCATGACTAATGTGCTAGCAGACTTTTGTAATGCTTTTGGGTTAAAATT TAATGTTGACAAATCTAGGGTGATGTGTTCAAGAAATGTGCAATGGAGAATTAAACATGACATATCTCAGCTCTTTCCTATCAAATTTGCTAGCAGTCCT GGCAAATATCTTAGGTTCCCTCTTATCCAAGGGAGAGTTAAACGTCCATATTTCAACTTTATTATTGAAAGAATTCAATCCAGGCAGACGGATTGGAAAC AAAGGTTGCTTAATAAACTAGGGAGGGACATGCTTGCTCGAGCAGTTATTTCTTCAACCCCCACTTATGCCATGCAAATTTTTTGGCTCCCTCAATCGAT TTGTAATGGTATCAATAAATTGATCAGGAATTTTATTTGGGGAAGGTCCGATGGAGAAGGTGGTCTTTATTTAGTTAATTGGGAATCGGTTTCATGCCCA AGGAGAATTGGAGGTCTAGGAATTCAGGATACTAGAGCTGCGAATGTTGCTCTTTTGGGTAAAGCAAGCTTGAAATCTTTTTAA
AA sequence Show only first row Show all	>Potri.006G175124.1 pacid=42767189 polypeptide=Potri.006G175124.1.p locus=Potri.006G175124 ID=Potri.006G175124.1.v4.1 annot-version=v4.1 MEKLVCLTTKKVSEKIWHPIHLLRGGPGISHLFFANDVLLFAKASTAQMQIMTNVLADFCNAFGLKFNVDKSRVMCSRNVQWRIKHDISQLFPIKFASSP GKYLRFPLIQGRVKRPYFNFIIERIQSRQTDWKQRLLNKLGRDMLARAVISSTPTYAMQIFWLPQSICNGINKLIRNFIWGRSDGEGGLYLVNWESVSCP RRIGGLGIQDTRAANVALLGKASLKSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24255			RNA-directed DNA polymerase (r...		Potri.006G175124 [exp]	0	1
					Potri.006G175050 [exp]	1.00	0.9604
AT1G21280			unknown protein		Potri.001G247404 [exp]	1.73	0.9481
AT1G43760			DNAse I-like superfamily prote...		Potri.006G175087 [exp]	3.46	0.9290
					Potri.004G011901 [exp]	4.47	0.9149
					Potri.008G062800 [exp]	4.89	0.9189
					Potri.008G052300 [exp]	9.69	0.8927
AT2G27500			Glycosyl hydrolase superfamily...		Potri.009G163700 [exp]	11.00	0.8834
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.001G255950 [exp]	13.71	0.9489
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	18.70	0.9007
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Potri.009G154300 [exp]	21.49	0.9144

Compare expression of checked genes

Potri.006G175124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.