Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57710 914 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 797 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 268 / 3e-76 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 259 / 4e-72 Clp amino terminal domain-containing protein (.1) AT2G29970 244 / 8e-67 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G29920 190 / 2e-49 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 150 / 8e-37 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G07200 140 / 1e-33 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G74310 72 / 1e-12 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G15450 60 / 8e-09 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G097300 [exp] 1573 / 0 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 284 / 1e-80 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G073800 [exp] 264 / 1e-73 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 258 / 2e-72 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 251 / 5e-70 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 240 / 2e-66 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 210 / 4e-56 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 169 / 1e-42 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 168 / 3e-42 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019984 [exp] 1114 / 0 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 1090 / 0 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 485 / 5e-157 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 482 / 6e-157 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 236 / 3e-64 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 229 / 9e-63 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 227 / 5e-61 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10020886 [exp] 216 / 7e-58 AT5G57710 226 / 2e-61 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 191 / 1e-49 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038320 [exp] 144 / 7e-35 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [poplar] [flax] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Potri.006G175200.1 pacid=42770146 polypeptide=Potri.006G175200.1.p locus=Potri.006G175200 ID=Potri.006G175200.1.v4.1 annot-version=v4.1 ATGAGAGCTGGTCTTAGCACGATCCAGCAAACCCTGACACCAGAGGCGGCGAGTGTACTAAACCACTCGATAGCCGAAGCAAGCCGCCGTAACCATGGCC AGACCACACCACTTCATGTTGCGGCTATACTATTAGGTTCCCCATCTGGTTTCCTCCGCCAAGCATGCATCAAATCACACCCTAATTCTTCACATCCTCT TCAGTGCAGAGCTCTCGAGCTCTGTTTTAGTGTTGCCCTTGAACGCCTCCCTACCGCACAGAACCTCAGTCCTGGCCTTGACCCTCCAATCTCCAATGCC TTAATGGCTGCGCTAAAGCGTGCTCAGGCTCATCAGCGAAGAGGGTGCCCTGAACAGCAGCAACAACCACTTTTAGCAGTCAAAGTCGAGCTTGAGCAGT TGATTATATCGATTCTTGATGATCCAAGCGTTAGTAGAGTTATGAGGGAAGCTAGCTTTTCAAGTCCAGCTGTTAAGGCAACAATCGAGCAATCTTTGAA TGCTTCTACGAATTCCAATTCTGCTGCTAATTCTGGGATTGGAATGGGGTTTCGTGCTCCAGGGGCTGTGGCTGTTCCTGCTCCTGTGACTAATAGGAAT TTGTATGTGAACCCAAGATTGCAACAAGGGAGTGTCGGTCAATCTGGTGCACAAAGAAACGAGGAGGTTAAGAAGGTTATTGATATTTTGTTGAAGAGTA AGAAGAGGAATCCTGTTTTGGTAGGTGAGTCGGAGCCACAGATGGTAGTGCAGGAGGTTTTGAAGAGAATAGAGAATAAAGAAGTAGGAGATTGGCCGTT AAAGAATGTTCATGTGATTCATTTAGAGAAAGGCTTTCTAGATAAAGCACAGATAGCGGCAAAGATTGTGGAATTAGGGGGATTGATTGAGACCCGGATA AGAAATTTGGATTGTGGTGGGGTGATTCTTGATCTGGGGGATTTGAAATGGCTTGTTGAGCAGCAAGTGAGCTTAACAGGTTCTGGTGGGGTTCAGCAGC AGCAGATTGTGTCAGATGTTGGGCGGTCGGCTGTGGCGGAGATGAGGAAGCTTTTGGGGAGGTTTGGAGAAGGGAGTGGTGGAGGAAAGGTTTGGTTGAT TGGGACTGCTACTTGTGAGACATATTTGAGGTGTCAAGTCTATCATCCTTCAATGGAAAATGATTGGGATCTGCAGGCAGTACCCATTGCTGCTAGAGCA CATCTTCCAGGGACGTTTCATCGGCTTGGAACCAGTGGAATCCTCAGCAGTTCAGTTGAATCTTTATCACCACTGAAGGGTTTTCCAACTGTTACACTTC CTCCACCAAGGCGTCTCTCTGAGAACTTGGATCCTGCTCGAATAATGAGTTGTTGCCCTAGTTGCATGCAGAATTATGATCAAGAGCTTGCAAAACTTGT ACCCAAGGAGGCTGAGAAATCTTCAGAAATCAAATCTGAAGCAGCTCAGCCTCCACTGCCACAATGGTTGAGAAATGCAAAGTCCCAAGATGGTGATGTC AAGACATCTGATCAGACAGTGACTAAGGATCAAGAACTGATGTTGAAGCAAAAGAAACAGGAGTTGCAGAAGAAATGGCACGATACATGCTTGCACCTTC ATCCTGCTTATCATCAACCTAATCTTGGACCTGAAAGAATTACCCAACCAGCTCTCTCAATGACAAGCTTGTATAATCAAAACCTGCTTCCTCATCAACC TTTCCAGCCCAAATTAAGCTTAAATAAAAAGCTGAGTGGAACCCTTGTGCTCAACCCAAATTTGTTGCCCAGCCAACCAGCTGGACAGGCAACCACTCCG CCTAGAAGCCCTGTGAGAACAGACCTAGTTCTTGGTAGACTGAAGGTTGTTGAGACCACTCCTGAAAAAGAACATGAAGAGCACACCAAGGACTTTTTAA GCCGTGTTCCTTCTGAGCCACTATCCAATTTGCATGAGTTGCCGAGCAGTAAACTTCTCAGCAAATTAGACACCGACTCATTCAAGAAGCTCCTCAAGGG TCTTCTGGAAAAGGTTTGGTGGCAACGAGATGCTGCATCTGCAGTGGCTACTACAGTGACACAATGCAAATTGGGTCATGGGAAAAGTCGGGGTACTGGA TCAAAGGGTGACATTTGGCTATTGTTCACGGGTCCTGACAGGGCTGGCAAGCAGAAGATGGCATCTGCTCTTTCAGAGCTTGTTTGTGTGACCAATCCAA TAATGGTTTGTCTTGGTTCACGGCGTGAGGATGGGGAATCTGTATTGAGTTTCCGTGGTAAAACTGTGCTTGATCGAATAGCAGAGGCAGTTAGAAGGAA CCCATTCTCAGTAATCGTACTTGAGGATATTGATGAAGCGGACATGCTTGTTAGAGGGAGCATAAAGCGGGCCATGGAGAGAGGTCGTATTGCAGATTCC CTTGGCCGTGAAATCAGTCTTGGTAATGTTATCTTCATTCTGACTGCAAATCGCTTACCAGACAATCCCAAATTCCTATCCAACAGCAATTCGCTGGATG AAAAGAAGCTTGCGAGTTTGGCAAGTGGAGGCTGGCAGTTAAAGCTAACCCTTTCTGAGAGAAGAGCAAAGCGCCGAGCCAACTGGCTTCATGATGAAGA GAGGTCGGCAAGGCCAAGGACGGACTTGGGACCAGCACTAGCATTCGATCTGAATGAAGCTGCTGATGCAGGGGGTGACAAAGCAGATGGCTCGCACAAT TCAAGTGATCTTACAGTTGATCACGAAGATGAACATGTCCTTAATAACAGACTGTTGACTTCTGCAACTTCATCAATCTCTAAAGAGCTACTCAATTCAG TAGACGATCACATTGTCTTCAAACCTGCAGATTTCAGCTCCATTAGACGTGACATCTCAAATTCTATAACCAAGAAGTTTTCGACCATCTTCAACAATCA GGTGCCGATTGAAATCCAAGACGAAGCATTGGAAAAAATAGTTGGTGGGATATGGTTAAGCCAAACAGGCTTGGAAGAATGGACCGACAACGTATTGGTT CCAAGCTTGCGCCAGCTCAAATTACGGCTACCCACGCGTGCCAATGAATCCATTACTGTCCAGCTCGAGCTTGATACCGATTCTGATAGTCGTAGCCGCG TAGATTGGCTGCCAAGTAGCATCAGAGCGGTGGTTGATGGGTTGTGA
AA sequence Show only first row Show all	>Potri.006G175200.1 pacid=42770146 polypeptide=Potri.006G175200.1.p locus=Potri.006G175200 ID=Potri.006G175200.1.v4.1 annot-version=v4.1 MRAGLSTIQQTLTPEAASVLNHSIAEASRRNHGQTTPLHVAAILLGSPSGFLRQACIKSHPNSSHPLQCRALELCFSVALERLPTAQNLSPGLDPPISNA LMAALKRAQAHQRRGCPEQQQQPLLAVKVELEQLIISILDDPSVSRVMREASFSSPAVKATIEQSLNASTNSNSAANSGIGMGFRAPGAVAVPAPVTNRN LYVNPRLQQGSVGQSGAQRNEEVKKVIDILLKSKKRNPVLVGESEPQMVVQEVLKRIENKEVGDWPLKNVHVIHLEKGFLDKAQIAAKIVELGGLIETRI RNLDCGGVILDLGDLKWLVEQQVSLTGSGGVQQQQIVSDVGRSAVAEMRKLLGRFGEGSGGGKVWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAARA HLPGTFHRLGTSGILSSSVESLSPLKGFPTVTLPPPRRLSENLDPARIMSCCPSCMQNYDQELAKLVPKEAEKSSEIKSEAAQPPLPQWLRNAKSQDGDV KTSDQTVTKDQELMLKQKKQELQKKWHDTCLHLHPAYHQPNLGPERITQPALSMTSLYNQNLLPHQPFQPKLSLNKKLSGTLVLNPNLLPSQPAGQATTP PRSPVRTDLVLGRLKVVETTPEKEHEEHTKDFLSRVPSEPLSNLHELPSSKLLSKLDTDSFKKLLKGLLEKVWWQRDAASAVATTVTQCKLGHGKSRGTG SKGDIWLLFTGPDRAGKQKMASALSELVCVTNPIMVCLGSRREDGESVLSFRGKTVLDRIAEAVRRNPFSVIVLEDIDEADMLVRGSIKRAMERGRIADS LGREISLGNVIFILTANRLPDNPKFLSNSNSLDEKKLASLASGGWQLKLTLSERRAKRRANWLHDEERSARPRTDLGPALAFDLNEAADAGGDKADGSHN SSDLTVDHEDEHVLNNRLLTSATSSISKELLNSVDDHIVFKPADFSSIRRDISNSITKKFSTIFNNQVPIEIQDEALEKIVGGIWLSQTGLEEWTDNVLV PSLRQLKLRLPTRANESITVQLELDTDSDSRSRVDWLPSSIRAVVDGL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57710			Double Clp-N motif-containing ...		Potri.006G175200 [exp]	0	1
AT3G14830			unknown protein		Potri.003G026500 [exp]	4.00	0.7397
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	4.89	0.7130	Pt-DREB1.3,DREB35
AT4G27290			S-locus lectin protein kinase ...		Potri.001G418100 [exp]	6.70	0.7333
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	10.14	0.7552
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.001G241600 [exp]	10.48	0.7145
AT5G64550			loricrin-related (.1)		Potri.001G206600 [exp]	12.96	0.7252
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	15.23	0.6695
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	20.19	0.6996	Pt-ARF2.1
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	21.00	0.7349
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	21.26	0.7348

Compare expression of checked genes

Potri.006G175200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.