Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18670 90 / 2e-22 RING/U-box superfamily protein (.1) AT4G30370 82 / 2e-19 RING/U-box superfamily protein (.1) AT5G41400 66 / 1e-13 RING/U-box superfamily protein (.1) AT2G42360 64 / 2e-12 RING/U-box superfamily protein (.1) AT4G09100 61 / 4e-12 RING/U-box superfamily protein (.1) AT3G16720 62 / 1e-11 ATL2 TOXICOS EN LEVADURA 2 (.1) AT3G60220 62 / 2e-11 ATL4 TOXICOS EN LEVADURA 4 (.1) AT2G42350 61 / 3e-11 RING/U-box superfamily protein (.1) AT1G63840 59 / 5e-11 RING/U-box superfamily protein (.1) AT2G44578 58 / 6e-11 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098100 [exp] 195 / 8e-64 AT2G18670 91 / 2e-23 RING/U-box superfamily protein (.1) Potri.018G098000 [exp] 170 / 4e-54 AT2G18670 87 / 6e-22 RING/U-box superfamily protein (.1) Potri.001G235100 [exp] 67 / 2e-13 AT1G04360 98 / 3e-24 RING/U-box superfamily protein (.1) Potri.014G043200 [exp] 62 / 3e-12 AT3G60966 76 / 4e-18 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 62 / 2e-11 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.008G165900 [exp] 62 / 2e-11 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 61 / 5e-11 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.005G113200 [exp] 59 / 1e-10 AT2G17450 66 / 2e-13 RING-H2 finger A3A (.1) Potri.006G201500 [exp] 58 / 1e-10 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019979 [exp] 106 / 4e-29 AT2G18670 113 / 5e-32 RING/U-box superfamily protein (.1) Lus10015506 [exp] 95 / 7e-25 AT2G18670 102 / 2e-28 RING/U-box superfamily protein (.1) Lus10008797 [exp] 65 / 1e-12 AT5G40250 77 / 2e-16 RING/U-box superfamily protein (.1) Lus10022223 [exp] 65 / 1e-12 AT1G23980 81 / 2e-17 RING/U-box superfamily protein (.1) Lus10042277 [exp] 63 / 9e-12 AT3G16720 104 / 2e-26 TOXICOS EN LEVADURA 2 (.1) Lus10016163 [exp] 62 / 1e-11 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10036466 [exp] 60 / 1e-10 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10041134 [exp] 59 / 2e-10 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10021524 [exp] 59 / 2e-10 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10027736 [exp] 57 / 2e-10 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G175700.2 pacid=42768968 polypeptide=Potri.006G175700.2.p locus=Potri.006G175700 ID=Potri.006G175700.2.v4.1 annot-version=v4.1 ATGAACAGCAAGCAAGCGCTCCTTTTAGTTAAGAAAAAACTTCTCCATTTGACAATTTCCTTTGCCTATATTCATTCAATTCCATCTGTAACCATGCCTC CTCCTCACCGCCACCATGATCACCACCGTACACACGGTGGTGCAACACCACCGAAACCAAACCAAAAGCTTCTTTCCTTAATCCTCAAAACCATAATAAT GACTGCAATAACCACCCTTTTTTTCCTATTCCTTGGTATTGCCGCCATCCTCCTCCTCATTGCCACCGCCGCACTCCACCGCCACTCGACTCCATCCTCC AATTCCTCAAATGGGTTGTCTCTCAAAGATTTAAAGAAGCTCCCAATATTCAGATTTTCGACTCAGACAAGACCTGAAACGGGTGCTAATCAAACTTCAT GTGTGGTTTGTCTTGAAGAGATAAAGCAAGGACAGTGGTGTAGAAACCTTGTTGGGTGTGGTCATGTGTTTCACAGGAAATGTGTGGATGCTTGGCTTGT CAAGGTTTCTGCGTGCCCTATTTGCAGGACACAAGTTGAATTGGTTCATGGAGTAAAAGATAGTCCATTATGGGACTTTGATTGGACAAATGAATTGAGG GTTTGGTAG
AA sequence Show only first row Show all	>Potri.006G175700.2 pacid=42768968 polypeptide=Potri.006G175700.2.p locus=Potri.006G175700 ID=Potri.006G175700.2.v4.1 annot-version=v4.1 MNSKQALLLVKKKLLHLTISFAYIHSIPSVTMPPPHRHHDHHRTHGGATPPKPNQKLLSLILKTIIMTAITTLFFLFLGIAAILLLIATAALHRHSTPSS NSSNGLSLKDLKKLPIFRFSTQTRPETGANQTSCVVCLEEIKQGQWCRNLVGCGHVFHRKCVDAWLVKVSACPICRTQVELVHGVKDSPLWDFDWTNELR VW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18670			RING/U-box superfamily protein...		Potri.006G175700 [exp]	0	1
AT2G33730			P-loop containing nucleoside t...		Potri.015G037200 [exp]	8.30	0.7243
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	13.03	0.6959
AT1G24267			Protein of unknown function (D...		Potri.003G169200 [exp]	16.43	0.6566
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.002G023500 [exp]	18.70	0.6002
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	19.44	0.7076
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	30.29	0.6362
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	38.10	0.6847
					Potri.006G055100 [exp]	38.27	0.7177
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	45.35	0.6852
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.003G090900 [exp]	48.50	0.6806

Compare expression of checked genes

Potri.006G175700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.