Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 436 / 4e-141 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 423 / 2e-136 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT1G08140 414 / 1e-132 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G13620 402 / 4e-128 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08150 390 / 7e-124 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 376 / 1e-118 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G28180 376 / 6e-118 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT2G28170 374 / 1e-117 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT1G08135 366 / 9e-115 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT3G44920 350 / 1e-108 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098300 [exp] 961 / 0 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176800 [exp] 408 / 5e-132 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 385 / 7e-122 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 385 / 7e-122 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 366 / 1e-114 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098600 [exp] 352 / 1e-109 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G182900 [exp] 339 / 7e-105 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.019G123800 [exp] 311 / 3e-94 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 306 / 4e-92 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043128 [exp] 448 / 5e-146 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 447 / 1e-145 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 425 / 2e-137 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 409 / 7e-131 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 387 / 7e-123 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10035312 [exp] 388 / 6e-122 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 387 / 6e-122 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10021413 [exp] 385 / 8e-122 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 374 / 7e-118 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 340 / 2e-104 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.006G176400.1 pacid=42769389 polypeptide=Potri.006G176400.1.p locus=Potri.006G176400 ID=Potri.006G176400.1.v4.1 annot-version=v4.1 ATGAGTTCTTATTCAGATGAAATACACCACAATATCACACAATTAAAACAATGCACAACCATACCACCATTTATTAATTCACCTGGTGTTTTTCAGGGCG ATAGTAACCTTTTGGAGGCTACATTGCCCAGGTTGGAGCTACTTATGTTTGCAATCTTCTTCACCAGCCATGTTTTTCATTTCATCCTTGAGCGCTTCAG CATCCCTTTGTTGGTTTCTCAGATTCTTGCTGGAATGATCCTTGGTAAGGCAGGCCTCGGGTTGCAAGCAGATTACAGAAGGATCATGTTTGCGATCGAC AGTGACCAACTGTTTGGCACAATTGGTGGATTCGGTTTCCAACTCTTTGTATTTCTAAATGGAGTTAAAATGGATTTAAGCCTGATAAGAAAGACAGGGA GAATGGCACTTTGCAGCGGTGTGCTGTCTATGGTGATGTCTGTACTATTTGGCGCGGTAACCACGTCGATTGTCAGCAGTTACTTGGGGCTACTCGAACT AGATAAGCTTTCGCTTTCCTTGGTGATGTTAGTGCATTCTATGACTCCGTTTCCTGTCACCTGTAGCTTTGTCAGTGACCTCGAACTAACCCATTCAGAG CTTGGCAGATTAGGACTCTCTGCAGCATTAAGCAGTGAATTACTGACCCAATTTCTTGCATGTAATGCCCTCCTTGTAGGCATTTTTTACCGGTATCATT ATCAAGGAGCTCTTAAAATTGTAGCAATAACTACGGCCTTTATTATTCTGACTGTTTTTGTGGTGAGACCGGCAATGCTCTGGGTGATCAAACAAACACC CGAAGGAAGGCCTGTCAGAGATTTATATATTTACTCCATCGTTCTAGGCGCATTGGTTTCTGGTCTAATATTTCACTTTATTGGCCTAAACATGTTCCTT GGGTCACTTGCTTTTGGATTGGCTGTACCAGCAGGACCTCCTCTTGCATCAGCTCTGGTTGAGAAGTTCGAATGCATGGTCTCAGGCGTACTTGTACCTT TCTTTATGGCCATGTGCACGATGAAAGCAAATTTTAGGGAGATCAGCTTTGACAAAAAATTAACGAAGGGCACAGCAATCGTCGTCACTGTAGTCAGCTT GACCAAATTTGGAGCTTGCTTGGTAACTCTCTTCTATTACAGGATGCCAAAACAGGATGCCTTCGCACTTGCTTTCATAATAAGCTCTAAAGGGATCGTT GAGCTGGGCGCGTATGCATTTATCTCAGAATCAGGGGTATTTACTGAAGGGATGTTCTCCTTTTTGGTCATTACCATTCTATTGTCGGCAACCATCTCGC CTATTTTCGTGAACTGGCTGTATGATCCATCAAGGAAATATGCAGGCTATCAGAAAAGGAACATTATGCATAGCAAAGATCTGTGTGTGCTAGCATGCAT TTACAGGCCAGATAATGTGACCAGCATCATCAATTTTCTCCAAGCCTTTTGTCCAACTCTAGAGAGCCCAGTTTCTGTTTGTGCACTTCATCTTATCAAG ATCAGTGGGCGAGCCACCTCGCTCTTCATTTCCCACCAAAAGCAGAAAAAGTCTCTCTCTGCCCGCTCCATTTCTGAGAATGTCATTCTCTCTTTCAGTA ACTTCTGGCGAAACAATTGCGAGATAGAATCTGTAAATGTCTTCACATCAATCTCTCCAACCAAATTCATGCACCAGGACATATGCACACTTGCGTTGGA TGAACTTGCATCCTTTATAGTGCTTCCATTTCATCTAAAATGGCTTGTTGATGGGTCTATTGAATCACAGGACTCTAGATTTAGGACACTGAATTGTTGT GTCCTTGAGAGAGCACCATGCTCAGTGGGGATCCTCATCGACCATGGTAATCAAGTAAATTCCATTTCCAGGGACTCATCAAGAGAGCAGTCCCTACTTG TTGCTCTGATGTTCTTCGGAGGCGAAGATGATCGAGAAGCTCGGGTGTTGGCTGAACGCATGTCTCAGCACAGAAACATTAGCCTAACAATAATCCATTT CGTTCTCTCAACTGGTGAGATTAAATCTGATTGGGAGAAAATGCAAGATTCTGAGAGGTTGAGGAATATTAAGCCTGGCTCTATAGAGCATAGAGAAGTG AAATACATTGAGGAGACGGTAAGCGATGGACTGGAAACTTCAAAGAAAATCCGATCAATCCTCGATAAATATGACCTCTTTATTGTTGGGAGAAGCAAAG ATGTGGAAACAATACAAACAGCAGGTCTTGATTATATGAACGAGTACCCAGAGCTTGGTGTTATTGGAAATCTGCTCGCTTCAATGGAAACCACTGAAAG ATACTCAGTCTTGGTTGTACAGCAACAGATATCCTTGTAA
AA sequence Show only first row Show all	>Potri.006G176400.1 pacid=42769389 polypeptide=Potri.006G176400.1.p locus=Potri.006G176400 ID=Potri.006G176400.1.v4.1 annot-version=v4.1 MSSYSDEIHHNITQLKQCTTIPPFINSPGVFQGDSNLLEATLPRLELLMFAIFFTSHVFHFILERFSIPLLVSQILAGMILGKAGLGLQADYRRIMFAID SDQLFGTIGGFGFQLFVFLNGVKMDLSLIRKTGRMALCSGVLSMVMSVLFGAVTTSIVSSYLGLLELDKLSLSLVMLVHSMTPFPVTCSFVSDLELTHSE LGRLGLSAALSSELLTQFLACNALLVGIFYRYHYQGALKIVAITTAFIILTVFVVRPAMLWVIKQTPEGRPVRDLYIYSIVLGALVSGLIFHFIGLNMFL GSLAFGLAVPAGPPLASALVEKFECMVSGVLVPFFMAMCTMKANFREISFDKKLTKGTAIVVTVVSLTKFGACLVTLFYYRMPKQDAFALAFIISSKGIV ELGAYAFISESGVFTEGMFSFLVITILLSATISPIFVNWLYDPSRKYAGYQKRNIMHSKDLCVLACIYRPDNVTSIINFLQAFCPTLESPVSVCALHLIK ISGRATSLFISHQKQKKSLSARSISENVILSFSNFWRNNCEIESVNVFTSISPTKFMHQDICTLALDELASFIVLPFHLKWLVDGSIESQDSRFRTLNCC VLERAPCSVGILIDHGNQVNSISRDSSREQSLLVALMFFGGEDDREARVLAERMSQHRNISLTIIHFVLSTGEIKSDWEKMQDSERLRNIKPGSIEHREV KYIEETVSDGLETSKKIRSILDKYDLFIVGRSKDVETIQTAGLDYMNEYPELGVIGNLLASMETTERYSVLVVQQQISL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.006G176400 [exp]	0	1
AT4G13030			P-loop containing nucleoside t...		Potri.002G199700 [exp]	2.23	0.7324
AT3G25855			Copper transport protein famil...		Potri.008G119200 [exp]	13.85	0.7001
AT3G05975			Late embryogenesis abundant (L...		Potri.006G112700 [exp]	15.16	0.7043
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	26.00	0.6887
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.009G023900 [exp]	27.71	0.5994	ATCS.1
AT2G13570	CCAAT	NF-YB7	"nuclear factor Y, subunit B7"...		Potri.005G065300 [exp]	35.55	0.6775
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Potri.003G060000 [exp]	37.81	0.6876
					Potri.009G086850 [exp]	38.18	0.6828
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	40.98	0.6397
AT2G46300			Late embryogenesis abundant (L...		Potri.002G167300 [exp]	41.71	0.6760

Compare expression of checked genes

Potri.006G176400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.