Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28030 283 / 3e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT2G06025 73 / 8e-15 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G39000 46 / 9e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142100 [exp] 67 / 1e-12 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.008G039300 [exp] 49 / 1e-06 AT2G39000 387 / 1e-135 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.010G222900 [exp] 49 / 1e-06 AT2G39000 370 / 5e-130 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Potri.005G054600 [exp] 43 / 0.0001 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 40 / 0.0004 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019975 [exp] 288 / 7e-98 AT4G28030 322 / 3e-111 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10015504 [exp] 108 / 3e-29 AT4G28030 134 / 1e-39 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10023517 [exp] 51 / 2e-07 AT2G39000 388 / 4e-137 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10040401 [exp] 51 / 3e-07 AT2G39000 386 / 3e-136 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10009229 [exp] 45 / 1e-05 AT2G39000 320 / 5e-112 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3) Lus10037996 [exp] 45 / 2e-05 AT2G39000 335 / 2e-115 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.006G176500.1 pacid=42767959 polypeptide=Potri.006G176500.1.p locus=Potri.006G176500 ID=Potri.006G176500.1.v4.1 annot-version=v4.1 ATGGCACTCCTCTCTTCTTCTCCTTCCCTCTCAATAACTTCTCCAAATTACCGTTACTACCCTTCCCGTCGACTTTGCCTCTACCCAATCTCAGCCACAC GCGTAGTCACTCCACACCACATCGACAAGTCGTCTCTTACAATCTCCGAAACGTCGTCGGAGGACCAACTGTGGGCCGCCGCGTGTCTCCGTGTACGTTC CTTCCACGAATTCAAGCCTTCCACTTTCGGTATCCAAGATCATAAAAGATACCTAGCAGAGCGTGAATTCGAAGCTTTAAAAGAACGAATTGCTGGTAAA AGAACCGGTTTTAATAGAGTTTCGTGTTTAAACGCGTCGCTTCCGTTGTCACAGTTGTTGAGCTTGCCTGATGATGATTTATGCGCGCAATGTAAGTTTA GTGAGAATGGAGAAGATAGAGTGGTGGTGGGGACACTTGATGTAAATCAAAGTATGAGTCTTCCTGATGAAATTACTGGAATGAAACCTGAGGGTATTGA AGGTCAATTTGCTAGGGGATACTTGAGCAATGTATGTGTTGCCAATGAACTTCATAGGAATGGATTGGGTTATGATCTTGTTGCAAAGTCTAAAGCAGTT GCTCAGAAATGGGGCATAACCGATCTCTATGTCCATGTTGCTGTCAACAATGAACCAGCAAAACAGTTATACATGAAAAGTGGTTTCGTCTATGAAAATG ACGAGCCTGCATGGCAAGCCAGGTTCCTTGATCGGCCACGGAGGCTTCTATTATGGCTTGGTCTCCCAGGTAACCAAAACTGGTGA
AA sequence Show only first row Show all	>Potri.006G176500.1 pacid=42767959 polypeptide=Potri.006G176500.1.p locus=Potri.006G176500 ID=Potri.006G176500.1.v4.1 annot-version=v4.1 MALLSSSPSLSITSPNYRYYPSRRLCLYPISATRVVTPHHIDKSSLTISETSSEDQLWAAACLRVRSFHEFKPSTFGIQDHKRYLAEREFEALKERIAGK RTGFNRVSCLNASLPLSQLLSLPDDDLCAQCKFSENGEDRVVVGTLDVNQSMSLPDEITGMKPEGIEGQFARGYLSNVCVANELHRNGLGYDLVAKSKAV AQKWGITDLYVHVAVNNEPAKQLYMKSGFVYENDEPAWQARFLDRPRRLLLWLGLPGNQNW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28030			Acyl-CoA N-acyltransferases (N...		Potri.006G176500 [exp]	0	1
AT2G18710		SCY1	SECY homolog 1 (.1)		Potri.006G175300 [exp]	4.79	0.9561
AT1G22850			SNARE associated Golgi protein...		Potri.013G099600 [exp]	13.30	0.9379
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	19.69	0.9409
AT2G45740		PEX11D	peroxin 11D (.1.2.3)		Potri.002G153800 [exp]	22.53	0.9366
AT2G04700			ferredoxin thioredoxin reducta...		Potri.001G350900 [exp]	32.31	0.9342
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	32.48	0.9349
AT1G73885			unknown protein		Potri.015G054100 [exp]	37.41	0.9329
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	38.82	0.9287	Pt-PPH1.1
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	39.19	0.9315
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	44.38	0.9306

Compare expression of checked genes

Potri.006G176500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.