Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30400 303 / 4e-98 RING/U-box superfamily protein (.1) AT2G18650 251 / 3e-78 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT5G40250 154 / 5e-42 RING/U-box superfamily protein (.1) AT1G23980 130 / 1e-33 RING/U-box superfamily protein (.1) AT5G57750 122 / 3e-32 RING/U-box superfamily protein (.1) AT3G48030 119 / 1e-29 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05810 109 / 3e-26 ATL43 RING/U-box superfamily protein (.1) AT4G28890 100 / 2e-22 RING/U-box superfamily protein (.1) AT5G17600 99 / 2e-22 RING/U-box superfamily protein (.1) AT2G20030 99 / 2e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098500 [exp] 735 / 0 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.017G072300 [exp] 172 / 4e-49 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 162 / 3e-45 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 154 / 3e-42 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 152 / 1e-41 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 104 / 4e-24 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 100 / 6e-23 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 100 / 1e-22 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 98 / 9e-22 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019973 [exp] 239 / 3e-74 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015502 [exp] 224 / 3e-68 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10014526 [exp] 136 / 1e-35 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 135 / 3e-35 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10029178 [exp] 131 / 8e-34 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 130 / 1e-33 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10008899 [exp] 105 / 8e-26 AT4G30400 95 / 3e-22 RING/U-box superfamily protein (.1) Lus10012745 [exp] 103 / 4e-24 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10023617 [exp] 101 / 2e-23 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10023206 [exp] 98 / 5e-23 AT4G30400 91 / 7e-21 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G176700.1 pacid=42769281 polypeptide=Potri.006G176700.1.p locus=Potri.006G176700 ID=Potri.006G176700.1.v4.1 annot-version=v4.1 ATGAACTTGGTTCTCCTTAAAATCAAAGAAAGCACCTTTATTTCTCCAACCCAGCAACCATATTTTCTTTCTCAGCCACCACCGCAACCAAATCTTGATA CCGATGGTTTCAACTTGAACACCAAGGTTAGTCCTAGTCTATTGCTTATCATTATTATTCTAGCTATTATTTTCTTTGTTTCTGGTTTGCTTCACCTCCT AGTGAGATTTCTTTTAAGACCACGTAATAGAGAGTACCCTGATGACTTAGAGAGTGTGACTGCTCTTCAAGGCCAATTGCAGCAACTCTTTCACCTTCAC GATGCTGGTGTTGACCAGACATTTATAGATGCTCTCCCTGTGTTCCAATACAAAGCCATTATTGGATTGAAGAACCCTTTTGACTGTGCTGTTTGTTTGT GTGAATTTGAGCCTGAAGATCAGCTAAGGTTGTTGCCAAAATGTAGTCATGCCTTTCACATGGAGTGTATAGACACATGGCTGTTGTCTCACTCCACTTG CCCTCTCTGTAGAGCTTGCTTGCTTTCTGATTTCTCTCCAAACAATACCCGCTCTCCCTTGGTTCTTGTTCTTGAATCTGGAAGTGAGAGCTCAAGAGAG CTTGTTAATGATAGAGAGGCTAATGTTGGCAGAACCAGTTCAGTTTTGACTACACATTCCAATCTGGGCTGTCATGGAGACACTGATTTGGGATCATCGC GTTTGGATATTTCACATAAGTCAAGTGAAAGTTTGACAAAAGATGATTCTGTCCCCAAAATAGTAGTAGATTCAGGGGAGAAGGTTGTTCCTGTTAAGCT AGGGAAGTACAGGAATGTGGATGTTGGTGAAGGGAGTAGCACAAATATTATTGATTCAAGAAGGTGCTATTCTATGGGGTCGTTTGAGTATGTATTGGAT GAGAATTCTTCATTGCAAGTACCTATAAGGACTCCAATGAGGAAACAGTCAAGCATGAAGACGACTTTGCCTTTAACACCTGGTCACAAGCTAGCAATGT CTGAATGTGATTGTGAATCAAGAAGAGAATTTGATGGCTTTGAAGGTCTTAAGAGTGTTCAAGTTAATGGGAGTGCTAGTATTGTTGCTAGCAGTGGCAA AACCATTGGTAGAAGCGAAAGAGAGAGCTTTTCTAGATCAAAGATATGGCTCAGAGGGAAAAAGGAGAAGCAGAGTTCAACTGGGGAATCTTCAAGAAGG GCCTTTTCCTTTCGATTTCCAGTGAATAAAAATGTTGTTGCTGATGATGATTTGAAGATGAGGAAGGGGGATAGTGATGTGAGAAGGACTAATTCTGAAA TAAGCTTTGGCAGGTGGGAAAATGGAGGTGGTCAATCGGGTGGTAATGTGCTGAATCAGAGTTGTCATAGATTGGAATTGCAAGAAAAAACGCCTTCATT TGCAAGGAGGACTCTGCTTTGGCTTGTGGGGAGACAGAACAAGGTTGTTCACTCATCCTTTACACCTAATGTCTAG
AA sequence Show only first row Show all	>Potri.006G176700.1 pacid=42769281 polypeptide=Potri.006G176700.1.p locus=Potri.006G176700 ID=Potri.006G176700.1.v4.1 annot-version=v4.1 MNLVLLKIKESTFISPTQQPYFLSQPPPQPNLDTDGFNLNTKVSPSLLLIIIILAIIFFVSGLLHLLVRFLLRPRNREYPDDLESVTALQGQLQQLFHLH DAGVDQTFIDALPVFQYKAIIGLKNPFDCAVCLCEFEPEDQLRLLPKCSHAFHMECIDTWLLSHSTCPLCRACLLSDFSPNNTRSPLVLVLESGSESSRE LVNDREANVGRTSSVLTTHSNLGCHGDTDLGSSRLDISHKSSESLTKDDSVPKIVVDSGEKVVPVKLGKYRNVDVGEGSSTNIIDSRRCYSMGSFEYVLD ENSSLQVPIRTPMRKQSSMKTTLPLTPGHKLAMSECDCESRREFDGFEGLKSVQVNGSASIVASSGKTIGRSERESFSRSKIWLRGKKEKQSSTGESSRR AFSFRFPVNKNVVADDDLKMRKGDSDVRRTNSEISFGRWENGGGQSGGNVLNQSCHRLELQEKTPSFARRTLLWLVGRQNKVVHSSFTPNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30400			RING/U-box superfamily protein...		Potri.006G176700 [exp]	0	1
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.002G221100 [exp]	4.24	0.7275
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	5.19	0.7388	Pt-CYCD1.3
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.008G013300 [exp]	5.47	0.7206
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024600 [exp]	19.13	0.7368
AT4G00490		BAM2, BMY9	BETA-AMYLASE 9, beta-amylase 2...		Potri.014G083800 [exp]	19.89	0.6783
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	21.97	0.7098
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	24.97	0.7216
AT3G24150			unknown protein		Potri.006G067100 [exp]	26.38	0.7165
AT4G15080			DHHC-type zinc finger family p...		Potri.006G020800 [exp]	27.54	0.6427
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	28.84	0.6828

Compare expression of checked genes

Potri.006G176700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.