Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 372 / 1e-117 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 355 / 1e-111 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G13620 304 / 4e-92 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G28180 303 / 1e-91 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44910 301 / 1e-91 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT5G22910 285 / 2e-85 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08140 285 / 5e-85 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28170 284 / 6e-85 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT3G44930 282 / 2e-84 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT3G44920 273 / 5e-81 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098600 [exp] 691 / 0 AT3G44900 388 / 6e-123 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.006G176400 [exp] 402 / 1e-129 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.018G098300 [exp] 391 / 1e-125 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.007G105200 [exp] 294 / 2e-88 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 290 / 9e-87 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G182900 [exp] 285 / 1e-85 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G171200 [exp] 281 / 8e-84 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 280 / 2e-83 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 274 / 2e-81 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041344 [exp] 407 / 1e-131 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 391 / 1e-125 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 353 / 8e-111 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 347 / 1e-108 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021412 [exp] 320 / 2e-98 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021413 [exp] 311 / 4e-95 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 301 / 1e-91 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10030013 [exp] 301 / 6e-91 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 300 / 3e-90 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 268 / 1e-78 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.006G176800.1 pacid=42767598 polypeptide=Potri.006G176800.1.p locus=Potri.006G176800 ID=Potri.006G176800.1.v4.1 annot-version=v4.1 ATGATAGCCGTAATTGGCTTTCAGTTCTTCATGTTTTCAAGTGGAGTAAAGTCCGATGTAAATATGCTGAAAAGTTTGGGAAGAAAGGTCTGGTCCATTG GCTTTCTGTCTGTGTTCCTGCCACTTCTGCTCGGTTTTGGAGCCTTAAAAATGACAACTGGCAGAGAAACCTTGTTTTTTGTTAATTTTGCTGCCGCAAC ATCATATTCTATCACTTCATTTCCTGTCATAGTTACCCTTCTCACTGACTTGAAACTTCTAAACTCTGAACTCGGCCGATTGGGACTATCGACCGCACAA GTCAGTGATGTTTTCAGCCTTTTTCTGATCTTTTTTTTGTCCGTGCTGAAAGTAATGAGCCAAGAAATGTACAGCAGGGAAAACATTTTTATAATTGCAG GCTTCATTGTTTTTGTTGCCGGTATTCTTAAGCCAGCACTGCATTCGCTGGTGAAAAAGCTCCGCAATGGCATGCCTCTGAAGGATGTATACATTTATCT CATCATGTCGTTGTTCCTCGGGTCTGTGTTCCTTTCACATTATTATGGACAGTCTGCTATCTTTGCTCCTTATATTATTGGTCTAGCTGTTCCCTCTGGG CCTCCTTTGGGGTCTGCTTTAGTGGAGAAATTCGAAGTGGTTTCCGGATTGTTCCTTCCACTCTTTGTTACGACCTGTGGCATGAGGTTGGACCTCTTAG AAACTAAATACACTGCAGAGATATCAATACCCGCTGCTGTTTCGATTGTTGTAATTACCTTATCCAAATTCTTGGTATGTTTCGTGTCACACTCGTACTT CTGGGAATTGCCAAAAAGTAATGCTGCTGCTTTTGCTCTCGTAATGTGTTCCAGAGGAGTGGTTGAGTTGGCCTTTTACACTTTCCTGAGTGATCAGCAG ATTGTAAAGGATGAATCATTTGTATTCATGCTTTTCATGGTCGTTCTCTTCAGTGGCCTTATACCATTTTTTGTTACATGTCTCTACAATCCGACAAAGA GTTACGCAGGACACCATATAAGAAGCCTTACGCATTCAGATTCCGATTCAGAGCTGCAAATCATTTCTTGTATCCATGCACCAGGGGATGTGACGGCAGT AATCAGACTTCTTGATGCCTCATGTGGTGGAGATAGCCCCATAGCAGTTACCGTCCTTCACCACATGAAGCTTGTTGCGCAATCCACGCCAATCTTCATT TCCCACAGAAAAGAAAGGCTAATACTATGTGAATACATATACTCCGTCAATGTCATCAATTTGTTTAATGAATTCGAGCAGAACACTCGTGGATCCGTTT CAATAAATGCTGTCACCGCAGTCTCTCCGCCAACGTCGATGCATGGTGATATTTGCTCAGTAGCAGTGGACAAGCTAGCATCTCTTATAATAATCCCATT TCATATCAGATGGTGGAAACAAGATGGGACCATTGAATCAGAGGATCATGCCCTAAGGGAATTGAATTGCAGGGTCCTTGAGAGTGCACCATGCTCTGTA GCTATCCTTGTCGATCGATGCAATAATATTCCAAGGAAGCCTGTCAGCAAAGATGATGAATTATCATTGACATATGATGTTGCTATGATCTTCTTGGGAG GCAATGATGACAGGGAAGCATTAACTTTTGCTATACGCATGGCAGAAGACACCAGGGTGAGGTTGTCTGTGGTGCATCTCATAGCCCCAAATAATGGTGT TAGTGGTGGTAATGAAGGTGTCAACATTAACTGTCAAGACTTTGAATCAACTCATGATTATATGGCTATGAGGGATATTAAGGAAAGAGAATACATAGCA TATAGAGAGGTGATAGCAGAAGATGCAGCTGCAACTGCTTCAATTGTAAGATCCATCATGGATGAACATGAGCTAATAGTAGTTGGAAGAAGAAACATGG AAGATGACATTCCTCAAACAGCTGGTTTAAAAGAATGGTGTGAGCACCCGGAGCTGGGGGTTTTGGGTGACCTAATTTTATCGAACGAGACCAAGAGTAC AAGTTCCTTGTTTGTTATACAAAAACAACAGCAAAAAAGTGCTCTAAACTAA
AA sequence Show only first row Show all	>Potri.006G176800.1 pacid=42767598 polypeptide=Potri.006G176800.1.p locus=Potri.006G176800 ID=Potri.006G176800.1.v4.1 annot-version=v4.1 MIAVIGFQFFMFSSGVKSDVNMLKSLGRKVWSIGFLSVFLPLLLGFGALKMTTGRETLFFVNFAAATSYSITSFPVIVTLLTDLKLLNSELGRLGLSTAQ VSDVFSLFLIFFLSVLKVMSQEMYSRENIFIIAGFIVFVAGILKPALHSLVKKLRNGMPLKDVYIYLIMSLFLGSVFLSHYYGQSAIFAPYIIGLAVPSG PPLGSALVEKFEVVSGLFLPLFVTTCGMRLDLLETKYTAEISIPAAVSIVVITLSKFLVCFVSHSYFWELPKSNAAAFALVMCSRGVVELAFYTFLSDQQ IVKDESFVFMLFMVVLFSGLIPFFVTCLYNPTKSYAGHHIRSLTHSDSDSELQIISCIHAPGDVTAVIRLLDASCGGDSPIAVTVLHHMKLVAQSTPIFI SHRKERLILCEYIYSVNVINLFNEFEQNTRGSVSINAVTAVSPPTSMHGDICSVAVDKLASLIIIPFHIRWWKQDGTIESEDHALRELNCRVLESAPCSV AILVDRCNNIPRKPVSKDDELSLTYDVAMIFLGGNDDREALTFAIRMAEDTRVRLSVVHLIAPNNGVSGGNEGVNINCQDFESTHDYMAMRDIKEREYIA YREVIAEDAAATASIVRSIMDEHELIVVGRRNMEDDIPQTAGLKEWCEHPELGVLGDLILSNETKSTSSLFVIQKQQQKSALN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.006G176800 [exp]	0	1
AT4G37530			Peroxidase superfamily protein...		Potri.001G329200 [exp]	1.41	0.9275
AT5G57970			DNA glycosylase superfamily pr...		Potri.001G044402 [exp]	3.46	0.9024
AT2G35215			unknown protein		Potri.001G142250 [exp]	5.19	0.8430
AT1G43760			DNAse I-like superfamily prote...		Potri.005G151275 [exp]	7.48	0.8622
					Potri.010G072501 [exp]	8.00	0.8622
AT1G40390			DNAse I-like superfamily prote...		Potri.003G046951 [exp]	11.66	0.7908
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041600 [exp]	11.95	0.8265	Pt-PR4.1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Potri.006G151600 [exp]	12.32	0.7845	ACO5
AT1G14550			Peroxidase superfamily protein...		Potri.010G236890 [exp]	13.56	0.7691
					Potri.001G013101 [exp]	13.85	0.7635

Compare expression of checked genes

Potri.006G176800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.