Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30410 142 / 2e-43 sequence-specific DNA binding transcription factors (.1.2) AT5G57780 120 / 5e-35 P1R1 P1R1, unknown protein AT3G17100 50 / 1e-07 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2) AT3G21330 48 / 1e-06 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06590 44 / 1e-05 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G59060 43 / 5e-05 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G24260 40 / 0.0006 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 40 / 0.0007 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099100 [exp] 334 / 5e-119 AT4G30410 135 / 1e-40 sequence-specific DNA binding transcription factors (.1.2) Potri.002G232500 [exp] 47 / 2e-06 AT2G43060 79 / 1e-18 ILI1 binding bHLH 1 (.1) Potri.013G007700 [exp] 45 / 6e-06 AT1G09250 95 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G201500 [exp] 44 / 6e-06 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.006G102600 [exp] 44 / 1e-05 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 44 / 2e-05 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.014G149800 [exp] 43 / 2e-05 AT2G43060 82 / 3e-20 ILI1 binding bHLH 1 (.1) Potri.014G118300 [exp] 42 / 3e-05 AT2G47270 62 / 2e-13 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G060100 [exp] 40 / 0.0002 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015500 [exp] 157 / 7e-49 AT4G30410 114 / 6e-32 sequence-specific DNA binding transcription factors (.1.2) Lus10026730 [exp] 42 / 5e-05 AT2G43060 97 / 4e-26 ILI1 binding bHLH 1 (.1) Lus10003386 [exp] 42 / 0.0001 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10002213 [exp] 41 / 0.0001 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10030844 [exp] 39 / 0.0003 AT1G23965 48 / 2e-08 unknown protein Lus10030641 [exp] 39 / 0.0004 AT1G23965 42 / 3e-06 unknown protein Lus10003471 [exp] 40 / 0.0008 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 40 / 0.0009 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G177000.1 pacid=42767389 polypeptide=Potri.006G177000.1.p locus=Potri.006G177000 ID=Potri.006G177000.1.v4.1 annot-version=v4.1 ATGCGTGCTCCTAGTTCAGTACTCAAGCAACAATTTCTCAAGAAATGGATAATGGGTCTCCAACTGTTTGGTTCTGCAAAGCAGAACATGAGCATCCTGG AGAGAAAGAAGGCAATAAGGCTATCAGCAGACATTGCTTTAGCTTCTACTAGAGATGGAAGGACTTGTTGGAGTCGTGCACTCATTGCCAATGCTTCAAA AGAAGATGATAGTAAAGTCCTTGTTCAGCACCTCTTAGCTCCTGAGAGTGAGAGGCTAAAGAAGGCGTCTATTGGATTGATCATGGACAACAAGAGGGTT AGATGCAAAAAAATCTTGAAGAGGAGTTGCTGCATAAAGAGAGTAAGAAAAGGTGCGCCTCAAGTTGTTCTTGCTAAATCAATCGCTAAAAGGATGGTAA TGAGAAGAACACAAGTATTGAAGAGTCTTGTGCCTGGAGGGGAATTTATGGATGATATCTCTTTGATTGAAGAAACCCTAGACTACATAGTATCTCTTCG AGCTCAGGTTGATGTAATGAGAAATCTTGCTAAAGCTACAGAAGTAGTCAACGGTAAATAG
AA sequence Show only first row Show all	>Potri.006G177000.1 pacid=42767389 polypeptide=Potri.006G177000.1.p locus=Potri.006G177000 ID=Potri.006G177000.1.v4.1 annot-version=v4.1 MRAPSSVLKQQFLKKWIMGLQLFGSAKQNMSILERKKAIRLSADIALASTRDGRTCWSRALIANASKEDDSKVLVQHLLAPESERLKKASIGLIMDNKRV RCKKILKRSCCIKRVRKGAPQVVLAKSIAKRMVMRRTQVLKSLVPGGEFMDDISLIEETLDYIVSLRAQVDVMRNLAKATEVVNGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	0	1
AT4G30410			sequence-specific DNA binding ...		Potri.018G099100 [exp]	2.00	0.8618
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Potri.018G083300 [exp]	2.23	0.8950	Pt-CAK1.2
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	3.16	0.8539	PtrAUX7
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	4.24	0.8594
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Potri.001G085100 [exp]	4.89	0.8422
AT3G12710			DNA glycosylase superfamily pr...		Potri.010G175300 [exp]	4.89	0.8357
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Potri.015G133800 [exp]	5.91	0.8458
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	6.48	0.8318
AT3G21690			MATE efflux family protein (.1...		Potri.011G002700 [exp]	6.63	0.8549
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	10.24	0.8041	Pt-EXP2.8,PtrEXPA2

Compare expression of checked genes

Potri.006G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.