Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57800 889 / 0 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT1G02205 360 / 2e-116 CER1 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) AT2G37700 350 / 2e-112 Fatty acid hydroxylase superfamily (.1.2) AT1G02190 330 / 2e-104 Fatty acid hydroxylase superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099400 [exp] 1125 / 0 AT5G57800 851 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Potri.014G152900 [exp] 352 / 6e-113 AT1G02205 789 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152600 [exp] 351 / 1e-112 AT1G02205 788 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G152301 [exp] 350 / 1e-112 AT1G02205 790 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Potri.014G180300 [exp] 327 / 2e-103 AT1G02205 793 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015499 [exp] 956 / 0 AT5G57800 877 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019971 [exp] 948 / 0 AT5G57800 879 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10008895 [exp] 946 / 0 AT5G57800 885 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10023210 [exp] 939 / 0 AT5G57800 882 / 0.0 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) Lus10019510 [exp] 322 / 2e-101 AT1G02205 763 / 0.0 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011473 [exp] 155 / 1e-42 AT1G02205 310 / 7e-102 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10011472 [exp] 154 / 3e-42 AT1G02205 303 / 5e-99 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023110 [exp] 119 / 7e-29 AT1G02205 261 / 6e-81 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3) Lus10023109 [exp] 57 / 5e-10 AT1G02205 87 / 3e-21 ECERIFERUM 1, Fatty acid hydroxylase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily PF12076 [poplar] [flax] Wax2_C WAX2 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G177500.1 pacid=42770637 polypeptide=Potri.006G177500.1.p locus=Potri.006G177500 ID=Potri.006G177500.1.v4.1 annot-version=v4.1 ATGGTAGCGGCTTTGTCAGCCTGGCCTTGGGAGAACTTGGGCATTTATAAGTATCTGTTATATGGACCTCTTCTTGCAAAAGTGCTGTCTACGAGGATTC TAGAGGGTTCCTTCAAGGATGATTGGTGCCTCCACATATTGATTATATGTGTTGCTAGATCATCTCTTCATCAACTGTGGAGTAGTTACGTTACCATGCT TTTCCTGACACGTAATCGCCGGATTAATCAACATGGCTATGATTTCAAGCAGATAGACAAAGAGTGGGATTGGGATAACTTCATACTTCTTCAAGCTCTC ATTGCATCCATGGCATGTTACATCGACCCCCCATTTATTGAAAATGTTCCTCTATGGAACGCAAAAGGTTTTATTACCATTTTGTCACTCCATGTGGGGA TTTCAGAGCCCCTATACTACTGGGTGCATAGATGCTTTCATGAAAGCTATCTCTTTAATCAGTACCATTCAATCCACCACTCTTCTCCAGTACTGCACCC TTTTACAGGTGCAACTGCAACATTTTTGGAGCATCTGGCTCTAACCACAGTCATTGGACTTCCAATAATTGGGTCTTGTATGCTGGGAAATGGATCAAGA ATCATGATTTATGGGTATCTCTTGATGTTCGATTTTCTTAGATGCCTGGGGCATTGCAATGTGGAAGTTGTTCCTCATCAATTGTTTGACACTCTTCCCT CTCTTAGATATCTTCTCTACACTCCAACATACCACAGCCTCCACCACACAGACATGGGCACCAACTTCTGCCTGTTTATGCCATTCTTTGATGCAATATG GAAGACACTTAATAGTAACTCGTGGGAACTACACAAGAAAACAAGCACGAATGCAGGAAAATACAGGAGGAAAATACCTGATTTCGTTTTCTTAGCTCAT GTGGTGGATATAACATCTTCAATACATGCCCCATTTTTTATACGATCTTTTGCTTCAATGCCTTATACGACAAGGCTTTTTTTGCTGGCTTGCTGGCCTC CGGCATTTATTGTTATGCTTATGATGTGGGCATGGTCTAAGACCTTCTTGATCTCTTTCTATAATCTCAGAGGCAGGTTGCATGAAACATGGAGTGTTCC AAGATTCGGCTTTCAGTATTTCTTGCCATTTGCTAAAGAGGGTATCAATAAGCACATAGAACAGGCCATTCTTAGGGCTAACAGGCTCGGGGTCAAGGTC ATTAGCCTCGCTGCATTGAACAAGAATGAAGCTCTGAATGGTGGTGGTACGCTGTTTGTGAACAAGCATCCAAACCTTAAAGTCCGAGTTGTTCATGGAA ATACCTTAACTGCTGCAGTGATTCTCAATGAAATCCGTGAGGATGTGAAAGAAGTGTTCTTAACAGGAGCAACTTCCAAACTTGGAAGAGCAATTGCCCT CTACCTTTGCCAAAGGAGAGTAAGAGTCCTGATGCTGACTTCGTCAAAAGAGAGATTTCAAAAAGTTCAAAAGGAGGCCCCACTTGAATATCAAAGCTAT CTGGTCCAAGTCACCAAGTACCAAGCAGCTCGTGGTTGCAAGACCTGGATCGTGGGGAAGTGGATCACACCAGGGGAGCAAAGTTGGGCCCCGACAGGGA CACATTTCCATCAATTTGTGGTGCCCCCCATTTTGTCCTTCAGAAGAGACTGCACATACGGTGATCTTGCTGCCATGAGACTACCTGTTGATGTTCAAGG GCTTGGAAATTGCGAGTACACCATGGACAGAGGAGTAGTCCACGCATGCCATGCAGGCGGTGTGGTTCACCTGCTAGAAGGCTGGGCTCACCATGAAGTT GGGGCCATTGATGTTGACAGAATCGATCTGGTTTGGAATGCTGCATTGAAGCATGGATTGAAACCGGTCTCCAATGTTGTCACCAGACAAAATTCAATGT GA
AA sequence Show only first row Show all	>Potri.006G177500.1 pacid=42770637 polypeptide=Potri.006G177500.1.p locus=Potri.006G177500 ID=Potri.006G177500.1.v4.1 annot-version=v4.1 MVAALSAWPWENLGIYKYLLYGPLLAKVLSTRILEGSFKDDWCLHILIICVARSSLHQLWSSYVTMLFLTRNRRINQHGYDFKQIDKEWDWDNFILLQAL IASMACYIDPPFIENVPLWNAKGFITILSLHVGISEPLYYWVHRCFHESYLFNQYHSIHHSSPVLHPFTGATATFLEHLALTTVIGLPIIGSCMLGNGSR IMIYGYLLMFDFLRCLGHCNVEVVPHQLFDTLPSLRYLLYTPTYHSLHHTDMGTNFCLFMPFFDAIWKTLNSNSWELHKKTSTNAGKYRRKIPDFVFLAH VVDITSSIHAPFFIRSFASMPYTTRLFLLACWPPAFIVMLMMWAWSKTFLISFYNLRGRLHETWSVPRFGFQYFLPFAKEGINKHIEQAILRANRLGVKV ISLAALNKNEALNGGGTLFVNKHPNLKVRVVHGNTLTAAVILNEIREDVKEVFLTGATSKLGRAIALYLCQRRVRVLMLTSSKERFQKVQKEAPLEYQSY LVQVTKYQAARGCKTWIVGKWITPGEQSWAPTGTHFHQFVVPPILSFRRDCTYGDLAAMRLPVDVQGLGNCEYTMDRGVVHACHAGGVVHLLEGWAHHEV GAIDVDRIDLVWNAALKHGLKPVSNVVTRQNSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.006G177500 [exp]	0	1
					Potri.017G128400 [exp]	1.73	0.9871
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	2.44	0.9848
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255800 [exp]	3.16	0.9710
					Potri.001G001000 [exp]	3.46	0.9742
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152600 [exp]	9.38	0.9659
AT3G62820			Plant invertase/pectin methyle...		Potri.014G129400 [exp]	9.48	0.9635
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	11.66	0.9443
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Potri.014G152301 [exp]	14.28	0.9579
					Potri.009G008300 [exp]	16.97	0.9653
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	17.14	0.9688

Compare expression of checked genes

Potri.006G177500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.