Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 374 / 6e-129 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 285 / 6e-94 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G75500 197 / 2e-59 WAT1 Walls Are Thin 1 (.1.2) AT1G21890 195 / 1e-58 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 186 / 2e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G64700 185 / 3e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 184 / 1e-54 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 179 / 1e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 178 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 178 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099500 [exp] 595 / 0 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177700 [exp] 390 / 4e-135 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 322 / 4e-108 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G029100 [exp] 206 / 3e-63 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G233600 [exp] 204 / 2e-62 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 203 / 7e-62 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 197 / 1e-59 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 197 / 1e-59 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G085100 [exp] 196 / 4e-59 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023211 [exp] 396 / 1e-137 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019970 [exp] 316 / 2e-106 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 307 / 6e-103 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10028030 [exp] 198 / 3e-60 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 196 / 4e-59 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 196 / 6e-59 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 195 / 6e-59 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 199 / 8e-59 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 194 / 5e-58 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 191 / 6e-57 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G177600.1 pacid=42768315 polypeptide=Potri.006G177600.1.p locus=Potri.006G177600 ID=Potri.006G177600.1.v4.1 annot-version=v4.1 ATGGGGGCATTTGGCGATTCCAAGCCTACATTGGCTATGTTTGGATTGCAATTCTCCTATGCAATTGTTTCTCTCATCACAAGAGCTGCTCTTATACATG GAATGAGTCCTAGGGTCTTTGTTGTCTACAGGCAAGCTATAGCAACTTTGGTCATTGTACCCGTATCTTATTTCTCAAGGAGAAAATCAGCTGGGACTTC TTTGGGACTGAGGAGCTTTTGTTTAGTGTTTTCGGCCTCATTTATAGGTGTAACGATCAATCAGAATGTCTTTGCTGAGGGGCTATACTTAGCCTCATCA TCAATGGCAAGTGCAATGGGTAATCTCGTTCCTGCCATCACATTTGTCATGGCAGTAGCTCTCGGATTGGAGAAGATTAAGATCGGAAGCTTCAGAAGTA TCGCGAAAATAGTAGGAACAGTAATATGTGTCAGTGGAGCCATATCAATGGCATTGCTCAGGGGACCAAAGCTACTTAACAAAACCATTTTTGGGTCGGG AGGTGAGGATTGGTTGCTGGGTTGTCTGTTTATATTTGTGAGCACTTGTTGCTGGTCAATATGGCTGATTTTGCAGGTTCCGCTTACAGCTAGCTATCCT GACCACCTATCCCTGTCAGCCTGGATGTGTTTCTTGGCAACACTACAGTCAGGAATTCTAACATTATTCTTAGAGAAAGATTTGGATGCATGGAAACTGC ATTCATACTTGGAACTTGTTGGTTGTTTGTTCACAGGAATTATAGGATCTGGGCTTTCTTTCTTTGTTCAGGCCTGGGTAATTTGTCAAAGGGGTCCCCT CTTCTCTGCAATGTTCAATCCTCTATGCACAGTTATTGTAACCGTATTGGCTGCTATTTTTCTCCATGAAGAGATTTACACTGGAGGCTTGATAGGAGGA GTTGCTGTGATTATTGGTTTGTATATTGTGCTATGGGGAAAGGCAAAAGACTTTATAAAGGAAGAAGACGAGATCGATCCGAAGCTGGAAATCGATCAAA GGCAGGCAGTTAAAATCACGATTCAGGACTCCAGAGAAGGAAAACTTGTTCTTGAAGAACCTTTTCTGTCTGATAAATCAAATGTCGTTGAAGAAGATGA TAATTTCCATCAATAA
AA sequence Show only first row Show all	>Potri.006G177600.1 pacid=42768315 polypeptide=Potri.006G177600.1.p locus=Potri.006G177600 ID=Potri.006G177600.1.v4.1 annot-version=v4.1 MGAFGDSKPTLAMFGLQFSYAIVSLITRAALIHGMSPRVFVVYRQAIATLVIVPVSYFSRRKSAGTSLGLRSFCLVFSASFIGVTINQNVFAEGLYLASS SMASAMGNLVPAITFVMAVALGLEKIKIGSFRSIAKIVGTVICVSGAISMALLRGPKLLNKTIFGSGGEDWLLGCLFIFVSTCCWSIWLILQVPLTASYP DHLSLSAWMCFLATLQSGILTLFLEKDLDAWKLHSYLELVGCLFTGIIGSGLSFFVQAWVICQRGPLFSAMFNPLCTVIVTVLAAIFLHEEIYTGGLIGG VAVIIGLYIVLWGKAKDFIKEEDEIDPKLEIDQRQAVKITIQDSREGKLVLEEPFLSDKSNVVEEDDNFHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177600 [exp]	0	1
AT2G41760			unknown protein		Potri.006G051500 [exp]	1.73	0.9504
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	2.82	0.9176
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.005G223000 [exp]	3.60	0.8855
AT1G19530			unknown protein		Potri.002G034500 [exp]	4.00	0.9027
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.018G099500 [exp]	4.12	0.8788
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	4.69	0.8909	FAD2.3
AT4G15620			Uncharacterised protein family...		Potri.001G323700 [exp]	4.89	0.9141
					Potri.006G056101 [exp]	5.74	0.9231
					Potri.012G059801 [exp]	6.70	0.8849
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.003G218900 [exp]	6.78	0.8694

Compare expression of checked genes

Potri.006G177600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.