Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 353 / 2e-120 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G75500 216 / 9e-67 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 202 / 7e-62 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G64700 190 / 3e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 190 / 7e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 187 / 7e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 185 / 4e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 183 / 4e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08300 182 / 5e-54 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G099500 [exp] 410 / 4e-143 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 399 / 2e-138 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177800 [exp] 352 / 6e-120 AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G068300 [exp] 220 / 1e-68 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.015G042900 [exp] 218 / 1e-67 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.005G233600 [exp] 214 / 4e-66 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.011G148400 [exp] 209 / 3e-64 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 203 / 3e-62 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 202 / 2e-61 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019970 [exp] 385 / 2e-133 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 369 / 3e-127 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 350 / 8e-120 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10038959 [exp] 213 / 1e-65 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10027251 [exp] 206 / 7e-63 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10003738 [exp] 199 / 2e-60 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 199 / 3e-60 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 195 / 2e-58 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 192 / 3e-56 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10018889 [exp] 186 / 1e-55 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G177700.3 pacid=42767550 polypeptide=Potri.006G177700.3.p locus=Potri.006G177700 ID=Potri.006G177700.3.v4.1 annot-version=v4.1 ATGGGTGGGTTTGATGCTTACAAGCCTGCTATGGGAATGGTTGGTTTACAATTCATTTATGCAGGGGTGGCTCTATTTACTAGAGCTGCTCTTGTACGAG GACTGAGTCCCAAGGTCTTTGTAGTCTACAGGCAAGGCATAGCAACTTTGATCATGGCTCCTCTAGCTTATGTTTCGAGGAGCAGAAGAAGTTCAAGTGG GTTCTCTTTGGGATTAAGGAGTTTTGCTTGGATATTTGCTGCCTCCCTTTTGGGGGTAACTGCCAATCAAAACGCTTATTTTGAAGGCCTCTACTTATCC TCTTCGACTGCAGCAAGTGCCTTGACTAATCTCATGCCTGCAATCACTTTTGTAATGGCAGCCATTTCCGGATTGGAGAAAGTTAATGTACGAAGCCTGA GAACTATTTCCAAGATTCTTGGAACAGTAATCTGCGTAAGTGGAGCCATTGCCATGGCATTACTCAAAGGTCCTAAGCTGTTAAACACAGAATTGTTACC AACAAAATCCTTTTTTAGCCCTGGAAGCGACAATTGGCTATTGGGGTGTCTATTTCTGTTTGGAAGCAGTTGTTTCTGGTCACTATGGATGGTCTTGCAG GTACCTATTTCAGCAAGTTGTCCTGACCACTTATATTCTTCTGCATGGATGTGTTTCCTCGCATCATTGCAATCATCAATGATTGCATTATTCGCGGAAA AGGATCTTACTTCTTGGAAGCTGATTACTCATCTTGAAATTGCTTCCTGTTTGTATGCGGGAATTGGACTGGCTGTGTCTTTCTTTGTCCAAGCCTGGGT AATTTCTCAGAGAGGTCCCCTCTTCTCTGCAATGTTCAATCCTCTATGCACAGTTATTGTTGGCATTTTTTCTGCTGTAGTTCTACATGAGGAGACATAC GCTGGAAGTTTGATTGGTGCTTTAGCTGTGATAATTGGTTTGTATGCTGTGCTATGGGGTAAAGCCAAAGACCTTGAAGAGATTAAAAATGAGATGCATC AGCAGCAGCAAAATGATCAGTCACCTGTGCAACTCTTAATAGATGAGTCTCCAGAGAAGAAGAATTGCAAAGCTGATTTGGAAGCACCGCTTCTTTCTTC ACAAATCAAAGGATGTTAA
AA sequence Show only first row Show all	>Potri.006G177700.3 pacid=42767550 polypeptide=Potri.006G177700.3.p locus=Potri.006G177700 ID=Potri.006G177700.3.v4.1 annot-version=v4.1 MGGFDAYKPAMGMVGLQFIYAGVALFTRAALVRGLSPKVFVVYRQGIATLIMAPLAYVSRSRRSSSGFSLGLRSFAWIFAASLLGVTANQNAYFEGLYLS SSTAASALTNLMPAITFVMAAISGLEKVNVRSLRTISKILGTVICVSGAIAMALLKGPKLLNTELLPTKSFFSPGSDNWLLGCLFLFGSSCFWSLWMVLQ VPISASCPDHLYSSAWMCFLASLQSSMIALFAEKDLTSWKLITHLEIASCLYAGIGLAVSFFVQAWVISQRGPLFSAMFNPLCTVIVGIFSAVVLHEETY AGSLIGALAVIIGLYAVLWGKAKDLEEIKNEMHQQQQNDQSPVQLLIDESPEKKNCKADLEAPLLSSQIKGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	0	1
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	1.00	0.9108
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	2.44	0.8773
AT2G47480			Protein of unknown function (D...		Potri.010G140800 [exp]	2.44	0.8901
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Potri.019G095200 [exp]	4.24	0.8649
AT5G41761			unknown protein		Potri.002G167900 [exp]	4.47	0.8838
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	5.91	0.8744
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	6.48	0.8089
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	6.63	0.8052
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.002G032400 [exp]	6.63	0.8544
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.002G205400 [exp]	6.92	0.8406

Compare expression of checked genes

Potri.006G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.